PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1058171g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 322aa MW: 36051.4 Da PI: 7.9578

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1058171g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	73.1	3.9e-23	185	229	2	46
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+h+ PDK_30s1058171g001 185 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHM 229 9*****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.22E-8	182	228	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.6E-19	183	229	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-14	185	228	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MELFQAQPDL SLQISPPNST PTPSWRKADE NLDLGFWRRA MDSNATSTTT RNLHSITNQS 60 TAEPDKAASE LSLAHPSATD STTMSSSLLH HPHHHHHHLH FHHHHHHPLV REGYHQDLGL 120 MRPIRGIPVY QHQPNSFPLV PQLQQQTLCD SSSTAANFTH FAPQGASRSR YLSSRFPVKR 180 SMRAPRMRWT TTLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHMY RTVKNTDKPA 240 VSSGQSDGFE NGSTGEISDD NLLDLHKRRD AEPSAGEAGI MAYQVIQPQG ACIPSRYPLM 300 TDHCVKFDIM TIVRGGHAIQ KD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026663995.1	1e-178	probable transcription factor KAN2, partial
Swissprot	Q9C616	7e-60	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A3Q0IEJ5	1e-176	A0A3Q0IEJ5_PHODC; probable transcription factor KAN2
STRING	XP_008802564.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	4e-48	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]