PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s1057761g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 252aa MW: 29094.4 Da PI: 10.4108 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.1 | 4.7e-13 | 11 | 58 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 i ++ ++t+skR+ gi+ K +E+S+L a++a+i fs+ +l +s PDK_30s1057761g003 11 ITDQASLHITYSKRKSGIISKSYEMSILSKAKIALISFSQAHRLNFFS 58 77888889********************************99998775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.2E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.754 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 8.68E-16 | 3 | 78 | No hit | No description |
SuperFamily | SSF55455 | 8.37E-16 | 3 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-11 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MVRRKIPITK ITDQASLHIT YSKRKSGIIS KSYEMSILSK AKIALISFSQ AHRLNFFSGV 60 NRIEDVIEDY VRSPKFLEVY APAQQEALQQ EEERKKAELR KAMDTLKKYF KVMFFVHARI 120 LVDTVGPFRW RKACLLPTYN FLMNNGPSTN QNNMVQNPFW LGGTSQIQPF SFQNHLLESQ 180 ERQLSDLINK ENNLVQRQSR SWLEGPSQIQ NCLPQTQKWQ LPEPLNAQVS NVVNKQTHAY 240 PGGPSTSIPV QR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22130.1 | 4e-16 | AGAMOUS-like 104 |