PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1057141g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GeBP | ||||||||
Protein Properties | Length: 335aa MW: 37435.9 Da PI: 4.5914 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 115.2 | 3.8e-36 | 59 | 156 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 fq+lw++ Dei++LqG+++f++++g+ ++++d+ fy+++k++++++++k+qlveK+rrLKkK++++v++++ gke++f+++hd+ +fe PDK_30s1057141g002 59 FQKLWTDADEITILQGFLEFTSQRGTthaNYQHDTGPFYDQIKSRLQLEFNKNQLVEKLRRLKKKYRNMVSRIAAGKEFVFKSPHDKATFE 149 9************************98867777********************************************************** PP DUF573 91 lskkiWg 97 +++kiW PDK_30s1057141g002 150 IASKIWS 156 ******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.4E-33 | 59 | 156 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MASTAEDDER DAAVYDEEVD DDSDDGVDSD EEYDDDRISP PGEERKPLAV AYDESRRIFQ 60 KLWTDADEIT ILQGFLEFTS QRGTTHANYQ HDTGPFYDQI KSRLQLEFNK NQLVEKLRRL 120 KKKYRNMVSR IAAGKEFVFK SPHDKATFEI ASKIWSPSFK KTRNRDSCNA PNLQLQERSN 180 LVPVQVAEDV ALSSDQMMSM SRRKRSDGEV AREMEVAVAT PVVFVPVVQQ TPCSSAPIPN 240 ASLIEQTVKS CLSPLFKELL QYAIGGPCVP GGAGDGGAAL NPLLLSSAGG SGAVQVDEKW 300 REQQILELEV YLERVELVHE QVKSKLEELR SMGSS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017696070.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A2H3ZI45 | 0.0 | A0A2H3ZI45_PHODC; probable transcription factor At3g04930 | ||||
STRING | XP_008777017.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 2e-51 | DNA-binding storekeeper protein-related transcriptional regulator |