PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1054111g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 459aa    MW: 51577.7 Da    PI: 8.26
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1054111g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.9e-12647648
                        HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +Ed+ll + v+++G+ +W++Ia+ +   +++ qc+ rw++yl
  PDK_30s1054111g003  6 LQEDDLLREQVALHGTINWTKIASQFK-DKSGRQCRRRWNSYL 47
                        68************************9.*************97 PP
2Myb_DNA-binding45.22.1e-145396146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        +g W++eEd ll +a k +G++ W+ Ia+ +  gRt++ +k+r+ +
  PDK_30s1054111g003 53 KGGWSPEEDNLLCEAQKVYGNR-WTEIAKVVS-GRTDNAVKNRFST 96
                        688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9E-8149IPR001005SANT/Myb domain
PROSITE profilePS5129414.632147IPR017930Myb domain
CDDcd001678.45E-11547No hitNo description
PfamPF139212.5E-14764No hitNo description
Gene3DG3DSA:1.10.10.605.4E-17753IPR009057Homeodomain-like
SuperFamilySSF466893.59E-2429105IPR009057Homeodomain-like
PROSITE profilePS5129421.65348102IPR017930Myb domain
SMARTSM007174.7E-1552100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-1954102IPR009057Homeodomain-like
CDDcd001676.95E-115697No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MVLVSLQEDD LLREQVALHG TINWTKIASQ FKDKSGRQCR RRWNSYLNSE CKKGGWSPEE  60
DNLLCEAQKV YGNRWTEIAK VVSGRTDNAV KNRFSTLCKK RVKNEALFKE NSGSFLNPNK  120
RVIIQNGCIT VQTTELSLST KQMRYNISDL KENKIREQYL GNHGMKKDQL RSPLAGLAQN  180
CNTAGGLLNQ HLIGNDPRTA VCDDNKTKGT FLRKDDPKLT ALLQQAEMLS SLAQKVNAEN  240
TKESLDDAWK EIQDYLAQTE ETGLLNRKIS GTDFLLDDFR DLMEDLKGTN TISQQSLSQG  300
SSERSTGSTD HFETQRNDRD HWTDNCSFNN DAEVNGPHEN VRLPSISTHQ EEVSPPTKRP  360
KENDENNCNV SNSQFASPLP TTPPFRSLAD GIRTPEFTAS HIQIDTNPID SKAPQIASRN  420
RKKMTERRFL LSIIGLPSPA PSPKSSQQPT CKKALLDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27710213108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797126.10.0transcription factor MYB124-like
TrEMBLA0A2H3YE120.0A0A2H3YE12_PHODC; transcription factor MYB124-like
STRINGXP_008797126.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-107MYB family protein