PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1051821g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 875aa MW: 99962.1 Da PI: 6.925

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1051821g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.5	1.1e-23	109	192	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +YA +vGFsvrk +s rn + +r +vCs+eg+r +++ k r+r+etrtgC a++ +k + +gk++vt+++++HnH+la PDK_30s1051821g003 109 EYYVKYAGSVGFSVRKGWWDRSARNL-TRSRVYVCSREGFRPKNEAK-----RPRPETRTGCLARMAIKITLSGKYRVTEFVSDHNHQLA 192 69******************7777.99********998777.....**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-21	109	192	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-28	290	384	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.211	558	605	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-4	580	607	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence Send to blast
MGRSRTEEIL NDEERLRSLS SSEEWCAKVQ LSDRLELNLT SGIKLVALNY KAEVSSLPLD 60 SSMLFLQIVG IRQEERAEEE PELPEEVVAN AGGVPIVGMV FENEDKAYEY YVKYAGSVGF 120 SVRKGWWDRS ARNLTRSRVY VCSREGFRPK NEAKRPRPET RTGCLARMAI KITLSGKYRV 180 TEFVSDHNHQ LAAPLDIQML KSQKLLTKVQ PIGCQKASLI PAGYKNYVRA KRAKDMQVGD 240 AGALLEYLQK MKGDNPSFYY AIQVDEYDQM TNVFWADAKS MIDYHYFGDV VCFDTSYRAN 300 DYGRPFALFI GINHHKQTVI FGAAFLHDET VGSFKWLFET FKTAMSGKQP KTILTDRCAA 360 ISDAIAAVCP GTMHHFCVWQ IYQNAVKHLA RVFEGSETFV HDFSRCIYDF EDEEEFLAAW 420 NSMLEKYNLK DSEWLTKLYE ERQTWALAYS QHVFCADIKS TLREDTLSTV LKEYLYSEKD 480 LSQFFKLYEM LVEERRYAEV QADYHANQGT PRIPPLRLLW QAANEYTPAV FEMFRREFEL 540 FMDCMVYSCG EVGTLSDYEA TVKDKTKEHF LRFDSSDGSV ICSCRKFESV GIQCCHALKV 600 LDFKNIKELP PQYILKRWKK DAKAASIKGS HGFMLDGDPR TSQLNRYSSL CRILYKIAAR 660 AAGNEDTFTL MVNQSDQLLE QVEQILQARL LEKPSLDNAP RVQHNNLIES GDVHHDRNNE 720 TQKVSGRKRN NGGVRRRHQS EQEISKRQKI RKGQPEEAEV APRDNEPHVV PNTIPSQPRN 780 PSNQFLAPNH FMQGPYVTAH QFGLGTTQGF HPLTQFGQDS PASALQQQPF HGSAHLTQGY 840 SAPDIHALQF VGSNPQLDRQ GGDQGHCAIP VWDFL

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence Send to blast

MGRSRTEEIL NDEERLRSLS SSEEWCAKVQ LSDRLELNLT SGIKLVALNY KAEVSSLPLD  60
SSMLFLQIVG IRQEERAEEE PELPEEVVAN AGGVPIVGMV FENEDKAYEY YVKYAGSVGF  120
SVRKGWWDRS ARNLTRSRVY VCSREGFRPK NEAKRPRPET RTGCLARMAI KITLSGKYRV  180
TEFVSDHNHQ LAAPLDIQML KSQKLLTKVQ PIGCQKASLI PAGYKNYVRA KRAKDMQVGD  240
AGALLEYLQK MKGDNPSFYY AIQVDEYDQM TNVFWADAKS MIDYHYFGDV VCFDTSYRAN  300
DYGRPFALFI GINHHKQTVI FGAAFLHDET VGSFKWLFET FKTAMSGKQP KTILTDRCAA  360
ISDAIAAVCP GTMHHFCVWQ IYQNAVKHLA RVFEGSETFV HDFSRCIYDF EDEEEFLAAW  420
NSMLEKYNLK DSEWLTKLYE ERQTWALAYS QHVFCADIKS TLREDTLSTV LKEYLYSEKD  480
LSQFFKLYEM LVEERRYAEV QADYHANQGT PRIPPLRLLW QAANEYTPAV FEMFRREFEL  540
FMDCMVYSCG EVGTLSDYEA TVKDKTKEHF LRFDSSDGSV ICSCRKFESV GIQCCHALKV  600
LDFKNIKELP PQYILKRWKK DAKAASIKGS HGFMLDGDPR TSQLNRYSSL CRILYKIAAR  660
AAGNEDTFTL MVNQSDQLLE QVEQILQARL LEKPSLDNAP RVQHNNLIES GDVHHDRNNE  720
TQKVSGRKRN NGGVRRRHQS EQEISKRQKI RKGQPEEAEV APRDNEPHVV PNTIPSQPRN  780
PSNQFLAPNH FMQGPYVTAH QFGLGTTQGF HPLTQFGQDS PASALQQQPF HGSAHLTQGY  840
SAPDIHALQF VGSNPQLDRQ GGDQGHCAIP VWDFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	157	KRPRP
2	726	748	RKRNNGGVRRRHQSEQEISKRQK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008777503.2	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2H3X2Y1	0.0	A0A2H3X2Y1_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008777503.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-120	FAR1-related sequence 5