PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1050381g009
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 148aa    MW: 16324.4 Da    PI: 9.2438
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1050381g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.73.2e-09546153
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                        ++++GVr+++ +g+Wv+eIr+p          l k   aeeAa+a+++a+  +
  PDK_30s1050381g009  5 KKFRGVRQRH-WGSWVSEIRHP----------LLKRRVAEEAARAYDEAAVLM 46
                        59*******9.*******9996..........4444445**********9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.27E-23558No hitNo description
SMARTSM003801.2E-24662IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-12658IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-20658IPR001471AP2/ERF domain
PROSITE profilePS5103213.893656IPR001471AP2/ERF domain
PRINTSPR003671.4E-10718IPR001471AP2/ERF domain
PRINTSPR003671.4E-103858IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR VAEEAARAYD EAAVLMSGRN AKTNFPKSHI  60
GVWQKRAGAR ADSNWVMTVK LGKAEQQESG SNAEGEVAPP TPAVEGTSQG MDEEDRIALQ  120
MIEELLNRSN CPASPSHGAL QSEGSFLL
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804592.15e-94ethylene-responsive transcription factor WIN1-like
SwissprotQ3E9587e-40SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A2H3YVW21e-92A0A2H3YVW2_PHODC; ethylene-responsive transcription factor WIN1-like
STRINGXP_008804592.12e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37173876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.22e-30ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]