PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1045771g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HB-other

Protein Properties

Length: 330aa MW: 36416.2 Da PI: 8.8158

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1045771g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.4	8.6e-07	73	129	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++ F + ++ ++e +e+++ +g+t +qV+ +F +R + +k PDK_30s1045771g001 73 KKPRDLLNPKAVNYMQSIFSVKDTIGKKETREISALCGVTVTQVREFFAGQRSRVRK 129 799**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.762	70	130	IPR001356	Homeobox domain
SMART	SM00389	0.0043	72	134	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.15E-7	72	133	IPR009057	Homeodomain-like
CDD	cd00086	9.45E-5	73	129	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-5	73	133	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MALVPGVSEG ALVELDVGNS AESPMALLSS QRELFHSQIE QLQKLVVAQC KLTGVNPLSQ 60 EMAAGALSIK IGKKPRDLLN PKAVNYMQSI FSVKDTIGKK ETREISALCG VTVTQVREFF 120 AGQRSRVRKF VRLSRDKATR VDASRASSNG CSLSSEQFLP VSKEASASSA DNMMIREQIP 180 VPGNAMIISI VRDGQQDTTD LKKVEEGPSC AALEELVPGI DTNDRKFLDN IFNLMRKEET 240 FSGQVKLMEW VLQIHNSAVL VWFLTKGGLT ILSTWLSQAA LEEQTTVLLI IFKVLCHLPL 300 HKALPVQMSA ILQIVNRLRF YRTSGHSCPY

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008810783.1	0.0	homeobox protein LUMINIDEPENDENS-like
Swissprot	Q38796	1e-110	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2H3ZAZ1	0.0	A0A2H3ZAZ1_PHODC; homeobox protein LUMINIDEPENDENS-like
STRING	XP_008810783.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-112	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]