PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1042271g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 854aa MW: 97882.6 Da PI: 7.4303

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1042271g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85	1.2e-26	92	180	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA ++GFsvr+++s++sk n+++++ +fvCs+eg+++e++ +k+r++ a+ r gCka+l+v ++ d+kw+vtkl++eHnHe+ PDK_30s1042271g004 92 FYIAYAGRIGFSVRIARSRRSKCNESVIMLRFVCSREGFSREKRIIaGKKTRKRAASIREGCKAMLEVIRRGDEKWVVTKLVKEHNHEV 180 9************************************998876546788888999****************************96 PP
2	FAR1	60.3	6.1e-19	215	306	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y +YA++vGF+ r+++s++s ++++ ++ ++vCsk+ +++ ++++ ++k+ + + ++ gC+a +++ +++ ++w+v+kl+leH+Hel+ PDK_30s1042271g004 215 YYYAYASRVGFEARVRQSRRSLHDESLKMLKLVCSKHRYHSGRDNNsdDSKRLQIQDPNKEGCEALFEIIRKDGDVWVVSKLVLEHTHELT 305 8*************************************9999994444455577889****************************98 PP FAR1 91 p 91 p PDK_30s1042271g004 306 P 306 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-24	92	180	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	8.4E-17	215	306	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-19	407	498	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.965	684	722	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-8	687	719	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-5	697	724	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 854 aa Download sequence Send to blast
MDGNPHGDSG LMEHHVDLED DSINFWATLG VSPHVIEPEQ NPMPPHHHME RQPPLEMVEQ 60 SVRRELFAME GDPRLDPFVG MEFESGEAAK TFYIAYAGRI GFSVRIARSR RSKCNESVIM 120 LRFVCSREGF SREKRIIAGK KTRKRAASIR EGCKAMLEVI RRGDEKWVVT KLVKEHNHEV 180 GMPSRVHYIA TEEGDAVIDP YLGMEFESLE IAKTYYYAYA SRVGFEARVR QSRRSLHDES 240 LKMLKLVCSK HRYHSGRDNN SDDSKRLQIQ DPNKEGCEAL FEIIRKDGDV WVVSKLVLEH 300 THELTPSPPS KVRCIRSQGE ILVISKNFDD TRNLLLNGQD SRYPREIRYN DLGPEDAQNL 360 LEYFKKTQAE NPAFYYAVQV ENNTCMTNIF WADAKSRMAY YYFGDAIRLD MTYKNDKELM 420 PIVIFTGVNH HLQPVVFGCA LLVDESEASL VWLFENWLAA MPAFHPVSLI TELNRAMAAA 480 VAKVLPNTHH CFCKKHVLNT IQEELPDLYS VHTPFEGELK KCVDESETRE SFESCWDAII 540 DKYGLKENAY LQSLYNIRQQ WVPVYLKETF LAAESVSQRC ENLDKVIEKY CTVKTPLRVA 600 VRQLGQATAS WYEKEAQADF ITLFEKPFLR TASPMEKQAA GIYTRTIFNR FQEEFVESLG 660 YHVDKIEDGA ISKYQVLRNE DAEETCRVTF NASENKAHCS CCMFESSGVL CRHALRVFII 720 NGVRMLPKDY ILKRWTKHAK SGAVLDDYGV ELRGNCEDPS TSRYNDLCRD AIKCAREGAT 780 TAEFYKVAKD ALQKAVNEVV SAKQKMGQQT LQSFITSQKK QTKKLGKVTP RKDASSKNVK 840 NLASKKPLME HDIR

Sequence ? help Back to Top

Protein Sequence Length: 854 aa Download sequence Send to blast

MDGNPHGDSG LMEHHVDLED DSINFWATLG VSPHVIEPEQ NPMPPHHHME RQPPLEMVEQ  60
SVRRELFAME GDPRLDPFVG MEFESGEAAK TFYIAYAGRI GFSVRIARSR RSKCNESVIM  120
LRFVCSREGF SREKRIIAGK KTRKRAASIR EGCKAMLEVI RRGDEKWVVT KLVKEHNHEV  180
GMPSRVHYIA TEEGDAVIDP YLGMEFESLE IAKTYYYAYA SRVGFEARVR QSRRSLHDES  240
LKMLKLVCSK HRYHSGRDNN SDDSKRLQIQ DPNKEGCEAL FEIIRKDGDV WVVSKLVLEH  300
THELTPSPPS KVRCIRSQGE ILVISKNFDD TRNLLLNGQD SRYPREIRYN DLGPEDAQNL  360
LEYFKKTQAE NPAFYYAVQV ENNTCMTNIF WADAKSRMAY YYFGDAIRLD MTYKNDKELM  420
PIVIFTGVNH HLQPVVFGCA LLVDESEASL VWLFENWLAA MPAFHPVSLI TELNRAMAAA  480
VAKVLPNTHH CFCKKHVLNT IQEELPDLYS VHTPFEGELK KCVDESETRE SFESCWDAII  540
DKYGLKENAY LQSLYNIRQQ WVPVYLKETF LAAESVSQRC ENLDKVIEKY CTVKTPLRVA  600
VRQLGQATAS WYEKEAQADF ITLFEKPFLR TASPMEKQAA GIYTRTIFNR FQEEFVESLG  660
YHVDKIEDGA ISKYQVLRNE DAEETCRVTF NASENKAHCS CCMFESSGVL CRHALRVFII  720
NGVRMLPKDY ILKRWTKHAK SGAVLDDYGV ELRGNCEDPS TSRYNDLCRD AIKCAREGAT  780
TAEFYKVAKD ALQKAVNEVV SAKQKMGQQT LQSFITSQKK QTKKLGKVTP RKDASSKNVK  840
NLASKKPLME HDIR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008784021.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026658787.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026658788.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2H3XHZ4	0.0	A0A2H3XHZ4_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008784021.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-151	FAR1-related sequence 5