PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1042241g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

TALE

Protein Properties

Length: 298aa MW: 33423.8 Da PI: 8.643

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1042241g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.7	1.1e-09	118	150	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LA+++gL+ +qV++WF N R + PDK_30s1042241g001 118 HPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 150 89*****************************88 PP
2	BELL	53.6	5.5e-18	1	41	32	72
BELL 32 tvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +v+ +Fe vagl sa+pY+slAlk++S+hFrc+++ai++q+ PDK_30s1042241g001 1 MVVTAFESVAGLRSATPYASLALKTVSKHFRCIRNAISDQL 41 79************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07526	3.5E-13	1	38	IPR006563	POX domain
PROSITE profile	PS50071	11.742	91	154	IPR001356	Homeobox domain
CDD	cd00086	6.59E-12	94	155	No hit	No description
SMART	SM00389	6.1E-9	94	158	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.48E-17	96	160	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.3E-28	97	158	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-18	111	150	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MVVTAFESVA GLRSATPYAS LALKTVSKHF RCIRNAISDQ LRHISKVLGE ELMSSPSSSR 60 GEMTPKLKHI NQSVLEQKAG ENSLGFVGQN QPVWRPQRGL PERAVAVLRA WLFDHFLHPY 120 PTDTDKHMLA TQTGLSRNQV SNWFINARVR LWKPMVEEIH MLETKGMKGA DLNSGNRNDA 180 NKLPMDDAGR PSNEQRPESG CSRPLHCSSM EPLLNDEGSR SMEQWHYEKR SRIDECGMQT 240 SMDGNLISFG TYQSAMDIGG LGAVSLTLGL RQEGGQQQQQ QQQQMRHFGS QMLRDFVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-15	100	158	5	63	Homeobox protein Meis2
3k2a_B	1e-15	100	158	5	63	Homeobox protein Meis2
4xrm_A	1e-15	100	158	5	63	Homeobox protein Meis2
4xrm_B	1e-15	100	158	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008789567.1	0.0	BEL1-like homeodomain protein 4 isoform X1
Refseq	XP_008789568.1	0.0	BEL1-like homeodomain protein 9 isoform X2
TrEMBL	A0A2H3XVX9	0.0	A0A2H3XVX9_PHODC; BEL1-like homeodomain protein 9 isoform X2
TrEMBL	A0A2H3XWF2	0.0	A0A2H3XWF2_PHODC; BEL1-like homeodomain protein 4 isoform X1
STRING	XP_008789566.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16049	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	1e-64	BEL1-like homeodomain 8