PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1040661g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GRF | ||||||||
Protein Properties | Length: 332aa MW: 37504 Da PI: 6.9772 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 70.5 | 2.1e-22 | 76 | 119 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg+ srk+++ PDK_30s1040661g001 76 DPEPGRCRRTDGKKWRCSKEACPDSKYCERHMHRGKRSSRKQVD 119 79**************************************9986 PP | |||||||
2 | QLQ | 53.8 | 5.9e-19 | 9 | 44 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+q+L++Q+ +++yL+++ PvP +L+++i++ PDK_30s1040661g001 9 PFTESQWQELEHQAIIFRYLVSGIPVPNDLILPIRR 44 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.5E-10 | 8 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.174 | 9 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.3E-13 | 9 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.576 | 76 | 120 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.9E-18 | 77 | 118 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MRGSRSRYPF TESQWQELEH QAIIFRYLVS GIPVPNDLIL PIRRSHLLDF PTLCFPHLPP 60 AGWGCFQMGC GRKVEDPEPG RCRRTDGKKW RCSKEACPDS KYCERHMHRG KRSSRKQVDL 120 SLASNPTSSR LSSPYSSLLS LSPPEADRAL FPSSSSSGSP SISLSAQNNI PYSHLDTVSL 180 SADKSNRELY GLKEDVNEYN FFSEDSRAER EGKFRPLVLS SMGEIQQSSD QNLITNFAIA 240 LASEEDKVVE SEGDSRKASS FDCLFDEWPE RSTGAWISLE ENQSKRASYS NTQLSISSSQ 300 YHNGLMVFTL SEHPIYPSVI RCFNIHPPFF II |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939918.2 | 0.0 | growth-regulating factor 1 isoform X2 | ||||
TrEMBL | A0A3Q0I2N4 | 1e-168 | A0A3Q0I2N4_PHODC; growth-regulating factor 1-like | ||||
STRING | XP_008787840.1 | 1e-168 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-47 | growth-regulating factor 5 |