PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1040171g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 275aa    MW: 30942.6 Da    PI: 7.662
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1040171g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l d++ ++G  +W++++ + g+ R +k+c++rw +yl
  PDK_30s1040171g001 15 KGLWSPEEDQKLRDYILKHGHSCWSAVPVKAGLQRNGKSCRLRWINYL 62
                        678*******************************************97 PP
2Myb_DNA-binding53.94.2e-1768113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg +++eE+e++ ++ +++G++ W++Ia +++ gRt++++k++w++yl
  PDK_30s1040171g001  68 RGIFSQEEEEIIMNLQAKWGNK-WSRIAMHLP-GRTDNEVKNYWNSYL 113
                         6889******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2951062IPR017930Myb domain
SuperFamilySSF466895.14E-2812109IPR009057Homeodomain-like
SMARTSM007173.4E-111464IPR001005SANT/Myb domain
PfamPF002491.4E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221669IPR009057Homeodomain-like
CDDcd001671.24E-91862No hitNo description
PROSITE profilePS5129426.25763117IPR017930Myb domain
SMARTSM007178.9E-1667115IPR001005SANT/Myb domain
PfamPF002495.2E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2570118IPR009057Homeodomain-like
CDDcd001674.70E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGCGTCEKPK VNYRKGLWSP EEDQKLRDYI LKHGHSCWSA VPVKAGLQRN GKSCRLRWIN  60
YLKPGLKRGI FSQEEEEIIM NLQAKWGNKW SRIAMHLPGR TDNEVKNYWN SYLKKKVIKA  120
QGSDPHGSAT QSLDSTNQSL VTHEKTINKD SGPSMVHRME FGSFKGAIQQ HFPKVFADWL  180
SVDHVIDQRP GSFVGASTPW NSNNSNIDEV LRPGSSQVVP QSKSDLHSGY GDTGTYGELQ  240
AQSEPVSQTI GDEFFDLLSL GEISDSLDMN HDSWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-23911723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806886.20.0transcription repressor MYB6
TrEMBLA0A2H3Z1N20.0A0A2H3Z1N2_PHODC; transcription repressor MYB6
STRINGXP_008780142.11e-146(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-56myb domain protein 19