PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1038161g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 389aa MW: 42639.6 Da PI: 7.0039 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl PDK_30s1038161g002 14 KGLWSPEEDEKLLKHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 5.8e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ PDK_30s1038161g002 67 RGTFSQEEEDLIIEVHAVLGNR-WSQIAAQLP-GRTDNEIKNFWNS 110 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-28 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.219 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.07E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.144 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.25E-11 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLKHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQEEEDLIIE VHAVLGNRWS QIAAQLPGRT DNEIKNFWNS CIKKKLRQRG 120 IDPTTHKPLA ETQQGGDDKM VDKFAGESSN PKNSATTGAP QFLLDRFVAS QDSTSSCRSS 180 NSPGFFPLPQ SSYASDCGGN RTASVGLAVT PNPLLCCCSA MSTLLPSASG SALSTWMGLK 240 PVMDNPPPSC AGISSYWEAA NCSSSSGSSG NTGGGIELQS NSSYFDNGIF PWPDLPPDRD 300 APIQLQGEPE DLKWSEYLHG AFPASAAIQN QSQPLYGDIK TESQFMVDGL STCYLNQQAQ 360 QQQQQQQQQQ ASNIYGKDFQ SVSVAFEQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-31 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00134 | DAP | Transfer from AT1G09540 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008800337.2 | 0.0 | transcription factor MYB61 | ||||
TrEMBL | A0A2H3YLB3 | 0.0 | A0A2H3YLB3_PHODC; transcription factor MYB61 | ||||
STRING | XP_008800310.1 | 1e-178 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2310 | 37 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 5e-94 | myb domain protein 61 |