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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PDK_30s1036321g001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
GRAS |
| Protein Properties |
Length: 309aa MW: 33846.4 Da PI: 6.6034 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s1036321g001 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 334.8 | 1.5e-102 | 2 | 282 | 83 | 374 |
GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
lf+ +sP++kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+gs s e+le+tg+rL++fA++lg
PDK_30s1036321g001 2 LFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGS----SMEALEATGKRLSDFAQTLG 88
79*****************************************************************....******************** PP
GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
+pfef + va+++ +l++++L v+++EalaV++ + h+l+d ++s ++ +L+l+++l Pkvv++veq+++ ++sFl rf+ea++yy
PDK_30s1036321g001 89 LPFEFCP-VAEKVGNLDPDRLGVNRREALAVHWLH--HSLYDVTGSDTN----TLWLLQRLAPKVVTMVEQDLSQ-TGSFLSRFVEAIHYY 171
*******.7*************************9..999999999999....********************98.899************ PP
GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
salfdsl a+++++s+er+ vE++ll+rei+nv++ g r + ++++Wre+l+++GF+ ++l +aa+qa lll +++sdgy++ ee
PDK_30s1036321g001 172 SALFDSLGASYGEDSQERHIVEQQLLSREIRNVLSVGGGGpARTGEVKFGNWREKLSQSGFRVISLAGNAAAQATLLLGMFPSDGYTLVEE 262
*********************************998776533444556******************************************* PP
GRAS 355 sgslvlgWkdrpLvsvSaWr 374
+g+l lgWkd L+++SaWr
PDK_30s1036321g001 263 NGTLKLGWKDLCLLTASAWR 282
*******************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MLFNGISPFV KFSHFTANQA IQEAFEREDR VHIIDLDIMQ GLQWPGLFHI LASRPGGPPR 60
VRLTGLGSSM EALEATGKRL SDFAQTLGLP FEFCPVAEKV GNLDPDRLGV NRREALAVHW 120
LHHSLYDVTG SDTNTLWLLQ RLAPKVVTMV EQDLSQTGSF LSRFVEAIHY YSALFDSLGA 180
SYGEDSQERH IVEQQLLSRE IRNVLSVGGG GPARTGEVKF GNWREKLSQS GFRVISLAGN 240
AAAQATLLLG MFPSDGYTLV EENGTLKLGW KDLCLLTASA WRPLHPPSST TTTTTATATA 300
TATTLCSSR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}. |
