PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1033711g010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GATA | ||||||||
Protein Properties | Length: 241aa MW: 26069.6 Da PI: 7.467 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.9 | 5.9e-18 | 169 | 203 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + kTp+WR gp g+ktLCnaCG+++++ +l PDK_30s1033711g010 169 CSHCLSHKTPQWRAGPLGPKTLCNACGVRFKSGRL 203 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.4E-16 | 163 | 217 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.857 | 167 | 199 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.47E-14 | 167 | 227 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-13 | 167 | 201 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.84E-14 | 168 | 225 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 169 | 194 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.4E-16 | 169 | 203 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDISADTSVS GGGPAGPLLG EFVPFVPGEP AEGGEDVSLE WLSIYMEDCL SGTTSYTTTS 60 QPLPPPTTSH DTPSPKPPQP QNPTKTSSLD DLAIPAKART KRRRVTTPKA LTSQDPLLFF 120 HQTCWLADSE LILPKKEQED EAPAVESLEG GGGGEAGEKI GKELQIRRCS HCLSHKTPQW 180 RAGPLGPKTL CNACGVRFKS GRLLPEYRPA KSPTFVSYKH SNSHKKVMEM RMMAILSSQS 240 N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 104 | KRRRV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008805375.1 | 1e-147 | GATA transcription factor 2-like | ||||
TrEMBL | A0A2H3YY31 | 1e-146 | A0A2H3YY31_PHODC; GATA transcription factor 2-like | ||||
STRING | XP_008805375.1 | 1e-146 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5962 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 8e-36 | GATA transcription factor 2 |