PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1031941g003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family FAR1
Protein Properties Length: 664aa    MW: 76030.3 Da    PI: 7.0633
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1031941g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.94.4e-2080173190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY ++A++ GF +r+++sk + ++   ++kr++vC + g + ++k+++ k++r+++++r++C+a++ +kk+      +w+v ++++ HnH
  PDK_30s1031941g003  80 EFYTNFARRNGFAIRRERSKGNpSHPLGVYKRELVCHRAGVSLPRKTAELKRQRNKKSSRCKCEAQMIIKKNVskgVTRWVVVHFSNVHNH 170
                         6*****************9999766667********************99999******************98766679************ PP

                FAR1  88 ela 90 
                         el 
  PDK_30s1031941g003 171 ELL 173
                         *96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-1780173IPR004330FAR1 DNA binding domain
PfamPF105516.3E-20295388IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MTKTSLRNNG CLTQRRQCPC GDEQCYIRIE GDEEDNTSME PTVPADPNLI HAAANTSEVA  60
SVDTPPYVGQ SFRTDDEAQE FYTNFARRNG FAIRRERSKG NPSHPLGVYK RELVCHRAGV  120
SLPRKTAELK RQRNKKSSRC KCEAQMIIKK NVSKGVTRWV VVHFSNVHNH ELLDSDEVRH  180
LPAYRNISSV DRERILFFAK AGFTVNLIMR ALEMEKGLKP GQLTFTERDL RNFLQASKNI  240
NRENEGAELL KACKATKEKN PDFRYEFTLD MNDRLEHIAW SYPDSIRAYK VFGDVVVFDT  300
TYRLYAYDRP FGVWFGVDNY GNTIFFGAVL LQDEKPASFA WALQAFVHLM DEKVPQTIVT  360
DLNMGLREAM MSVLPNTKQA FSTWHIMSKL PSWFSTLLGS RYERFVSEFH RVYALESEND  420
FVHQWGQMIN EFGLGSDRHV AILSYHREYW ALPFLRGWFF GGLLTTGFAL SIKAFFKGFL  480
ISQTRLKDFV EQVMVAIDLQ NQAGEEATMR QNYQNVQIKT CMPIEEHASS VLTPYAFEVF  540
QKELVSSTQF AVYETQGDTY LVRHHLKTDG GHLWHMSKLL THVRDMPTVD EGASDLEPVS  600
SLDATVDVTP VRSRGRPKKL RAAIDIPKEM QALQEPQALP EMQVLSETRD LSETQALSET  660
QALS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792978.10.0protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A2H3Y4040.0A0A2H3Y404_PHODC; protein FAR1-RELATED SEQUENCE 11-like
STRINGXP_008792978.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-179FAR1-related sequence 11