PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1031941g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | FAR1 | ||||||||
Protein Properties | Length: 664aa MW: 76030.3 Da PI: 7.0633 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.9 | 4.4e-20 | 80 | 173 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY ++A++ GF +r+++sk + ++ ++kr++vC + g + ++k+++ k++r+++++r++C+a++ +kk+ +w+v ++++ HnH PDK_30s1031941g003 80 EFYTNFARRNGFAIRRERSKGNpSHPLGVYKRELVCHRAGVSLPRKTAELKRQRNKKSSRCKCEAQMIIKKNVskgVTRWVVVHFSNVHNH 170 6*****************9999766667********************99999******************98766679************ PP FAR1 88 ela 90 el PDK_30s1031941g003 171 ELL 173 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-17 | 80 | 173 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.3E-20 | 295 | 388 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MTKTSLRNNG CLTQRRQCPC GDEQCYIRIE GDEEDNTSME PTVPADPNLI HAAANTSEVA 60 SVDTPPYVGQ SFRTDDEAQE FYTNFARRNG FAIRRERSKG NPSHPLGVYK RELVCHRAGV 120 SLPRKTAELK RQRNKKSSRC KCEAQMIIKK NVSKGVTRWV VVHFSNVHNH ELLDSDEVRH 180 LPAYRNISSV DRERILFFAK AGFTVNLIMR ALEMEKGLKP GQLTFTERDL RNFLQASKNI 240 NRENEGAELL KACKATKEKN PDFRYEFTLD MNDRLEHIAW SYPDSIRAYK VFGDVVVFDT 300 TYRLYAYDRP FGVWFGVDNY GNTIFFGAVL LQDEKPASFA WALQAFVHLM DEKVPQTIVT 360 DLNMGLREAM MSVLPNTKQA FSTWHIMSKL PSWFSTLLGS RYERFVSEFH RVYALESEND 420 FVHQWGQMIN EFGLGSDRHV AILSYHREYW ALPFLRGWFF GGLLTTGFAL SIKAFFKGFL 480 ISQTRLKDFV EQVMVAIDLQ NQAGEEATMR QNYQNVQIKT CMPIEEHASS VLTPYAFEVF 540 QKELVSSTQF AVYETQGDTY LVRHHLKTDG GHLWHMSKLL THVRDMPTVD EGASDLEPVS 600 SLDATVDVTP VRSRGRPKKL RAAIDIPKEM QALQEPQALP EMQVLSETRD LSETQALSET 660 QALS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792978.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11-like | ||||
TrEMBL | A0A2H3Y404 | 0.0 | A0A2H3Y404_PHODC; protein FAR1-RELATED SEQUENCE 11-like | ||||
STRING | XP_008792978.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 1e-179 | FAR1-related sequence 11 |