PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1025391g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | G2-like | ||||||||
Protein Properties | Length: 357aa MW: 39598.4 Da PI: 4.5543 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.9 | 1.7e-31 | 198 | 252 | 2 | 56 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ PDK_30s1025391g002 198 ARRCWSPDLHRRFVNALQILGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 252 699**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.213 | 194 | 254 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 196 | 255 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-15 | 198 | 255 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-6 | 199 | 250 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 6.2E-26 | 199 | 252 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGSPSDLSLD YKPNSYPMIQ KPLGEQPDQT QKIQEFLARL EEERLKIEAF KRELPLCMQL 60 LNNAVETYRQ QLETYQTNQA PRPVLEEFIP LKHASIDGSE KAPNAPSEKA SWMVSAQLWS 120 AANDATRNQP MAAPPLKETE HAFDVSPKLA LDTKQRNGGA FLPFSKEKNK GMGSASRGLP 180 ELALASSEKA VEEKQSCARR CWSPDLHRRF VNALQILGGS QVATPKQIRE LMKVDGLTND 240 EVKSHLQKYR LHTRRPIPAP QASVAAAPQL VVLGSIWVPP ELGSPESEMR SGGERSESIE 300 EEEEGEEREE EEEEEEEEEE EDVEPATDGK AEEKALVPLA VKAEEGGGRG GEVALKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-14 | 198 | 250 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-14 | 198 | 250 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-14 | 198 | 250 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-14 | 198 | 250 | 2 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792133.1 | 0.0 | transcription factor NIGTH1 | ||||
Swissprot | Q9ZQ85 | 3e-97 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | A0A2H3Y1Q2 | 0.0 | A0A2H3Y1Q2_PHODC; transcription factor NIGTH1 | ||||
STRING | XP_008792133.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9773 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 7e-89 | G2-like family protein |
Publications ? help Back to Top | |||
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