PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1023091g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 949aa MW: 103701 Da PI: 6.6192 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.1e-08 | 38 | 79 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e + + + +G++ +++I++ + ++t +c+++++k PDK_30s1023091g001 38 PWTQEEKEVFMEMLATFGKD-FTKISSFFS-HKTTADCIEFYYK 79 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 34.2 | 5.8e-11 | 251 | 290 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++a ++G++ +++I+r++g +R+++qck ++ PDK_30s1023091g001 251 WTDEEKSMFIRALSMYGKD-FARISRRVG-TRSREQCKIFFS 290 *****************99.*********.********8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-14 | 22 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.485 | 34 | 85 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-8 | 35 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-6 | 37 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-6 | 37 | 79 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 14.281 | 246 | 297 | IPR017884 | SANT domain |
SMART | SM00717 | 9.7E-9 | 247 | 295 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.76E-11 | 250 | 298 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.8E-7 | 250 | 291 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.42E-9 | 251 | 289 | No hit | No description |
Pfam | PF00249 | 1.2E-9 | 251 | 289 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 949 aa Download sequence Send to blast |
MPALIFDEKE RKQTKFITSN RLIEDPISFE KERAMINPWT QEEKEVFMEM LATFGKDFTK 60 ISSFFSHKTT ADCIEFYYKN HKSESFKEVK KRLDLKKQWQ CLPTSNYLVT SGKKWNRGIN 120 AASLDMLGAA SMVAAHSSGN AKSQQRYAGR SIHGTYNGLK VPCGNYRSLE TVSSVEIPGH 180 ERETVAADVL AGMCGALSSE AMSSCVTSSI DPVEKMSFMA VERPLTLEVT QIFDEGTCSN 240 EGCGDLDSFD WTDEEKSMFI RALSMYGKDF ARISRRVGTR SREQCKIFFS KARKCLGLDV 300 IHQGISNGGM PMGDANGGRG DADDACAAEM DSAICSMQSC SKMDADVCQS VAKINSEGWV 360 NAAMTPLQAE TDRTSEQGVV GGINLEEEGK VDKHVSVLPE NKLVSEGDNP QSVFTLKKNA 420 DAAIRSNESV QLHEAVECVH AAMKIGGSMV SPVEPAFTAC MEVESKAHID DVVQQKGNGG 480 KFSADVMKKE VDVPLLVPET ESCNKQQMDI DLINGGKICS ASNSKVDLNS LLPGKKVDDC 540 PRSTFAPDCQ HQIHLDLLRC LQKIPQGISL KQENPDSLLL NSVLPDPSSI CFEGPHLVAS 600 QAMNFEEHGN KQHLNPAARD LYQQYMLRNP FLHLVDQPLH VLRGYPLQVK NQEVKREADP 660 LIGEKPVLIE SHPKKNGVSQ SNQFFTSEMH GDHCYRSSLS RSRPGVLFPL RSEAQPEAQL 720 RHCSQNACSE PEEQTHQASD VKLFGQIICH PSSSQKSNSS PHECNSKPSS PRINRSSTGK 780 PSNAVKAGMP FASTPGNSGH VGLEELPVRS YGFCDGNRLQ SGFSSLPESA VMLAKYHGSL 840 AGMSFYTAKD SVPSSNGILA QQSYMQHLAS DGKRLESFCE LQKRNGIEMV SGFQQQGRVA 900 RLGANMVGGG ILGSGGVSDP VAALKMHYAA RANVLSGEME SWRGDIGGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 2e-15 | 1 | 87 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 2e-15 | 1 | 87 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008793426.1 | 0.0 | uncharacterized protein LOC103709716 isoform X1 | ||||
Refseq | XP_017698885.1 | 0.0 | uncharacterized protein LOC103709716 isoform X2 | ||||
Refseq | XP_017698886.1 | 0.0 | uncharacterized protein LOC103709716 isoform X3 | ||||
TrEMBL | A0A2H3Y4R5 | 0.0 | A0A2H3Y4R5_PHODC; uncharacterized protein LOC103709716 isoform X1 | ||||
TrEMBL | A0A2H3ZR43 | 0.0 | A0A2H3ZR43_PHODC; uncharacterized protein LOC103709716 isoform X2 | ||||
TrEMBL | A0A2H3ZRW3 | 0.0 | A0A2H3ZRW3_PHODC; uncharacterized protein LOC103709716 isoform X3 | ||||
STRING | XP_008793426.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6299 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-70 | MYB family protein |