PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1022651g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family FAR1
Protein Properties Length: 704aa    MW: 80998 Da    PI: 8.4015
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1022651g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.53e-2535122190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fYn+YAk vGFsvrk+  +++  +g i++rt+vC+keg++ ++k++ ++ +++r+++rtgC a+l++k + +g ++v++++  HnHel+
  PDK_30s1022651g002  35 QFYNNYAKVVGFSVRKAWINRR-ASGVIISRTYVCYKEGYQGNRKDE-SEVKKPRQNERTGCLAHLTIKITANGAYRVSEFHPMHNHELV 122
                         6****************99986.9999*****************999.9999************************************97 PP

2FAR182.47.8e-26193282190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fYn+YAk++GF+vrk+  +++  +g i++rt+vC+keg+  ++k++ +++++r r+++rtgC a++++k+ k+g+++vt+++  HnHe++
  PDK_30s1022651g002 193 QFYNDYAKRIGFDVRKAWVNRR-SSGVIISRTYVCYKEGYYGNKKDEnQVEKHRIRPNERTGCLARMVIKLAKNGRYRVTEFQPMHNHEFV 282
                         6****************99886.8999************9877666647888999**********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-2335122IPR004330FAR1 DNA binding domain
PfamPF031011.1E-23193282IPR004330FAR1 DNA binding domain
PfamPF105515.8E-11321365IPR018289MULE transposase domain
PROSITE profilePS509669.73539586IPR007527Zinc finger, SWIM-type
PfamPF044349.2E-6560583IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-4561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MAELAERNPP SEDADDTSWV PRVDMEFKSD EAAYQFYNNY AKVVGFSVRK AWINRRASGV  60
IISRTYVCYK EGYQGNRKDE SEVKKPRQNE RTGCLAHLTI KITANGAYRV SEFHPMHNHE  120
LVAPANILKS HRVAKRARAV IANAASQKAM MECLVRQAGG YRQVAFVSVQ DAADKSWAPK  180
VDMEFENDEK AYQFYNDYAK RIGFDVRKAW VNRRSSGVII SRTYVCYKEG YYGNKKDENQ  240
VEKHRIRPNE RTGCLARMVI KLAKNGRYRV TEFQPMHNHE FVTARTAHTL KSHRAANKIR  300
NAEVNSVDDS CASPKAIHDH TFKTAMYGKQ PQVILTDQNP LIRNAINLVW PATTHRVCVW  360
HMYQNASKYL GQVFQGSRTF AYDFSRCLFD CEEEEEFVSA WGKMLEKYDL KDNEWLKMLF  420
EDRKKWAVAY GRETFCADMK STQRLNSISG TLKENLSPER DLLQFLKHFE RMLDEQWDAE  480
LQADCHATSS TTIIAPSRML KQAASVYTPA MFEMFQREFE MSMDCMVHNS GAVETIYEYK  540
VISEDNPKVH LVRFDSLNGT LVCSCKMFEF VGIQCRHVLK ALDIINIKEL PPQYYLKRWR  600
KDAKVGSLRD NLGLATDIDP SSSKATRLSS LCRIISIVAA RAAETVEGYT FVQNQSDQLF  660
DHVVAARAAE TVEGYTFIQN QSDQLFDHVY QILQARPPEE LQIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026658126.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A3Q0HU820.0A0A3Q0HU82_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_008781580.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-58FAR1-related sequence 5