PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1021181g006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YB | ||||||||
Protein Properties | Length: 193aa MW: 22110.1 Da PI: 9.0532 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 148.3 | 1.6e-46 | 55 | 148 | 3 | 96 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 q+++lPianv+rimk++lP+na+isk aket+qec+sefisfvt+ea+++c++ekrktingdd++ a+ tlG+++y++++k yl +yre PDK_30s1021181g006 55 GQNHLLPIANVGRIMKQALPNNARISKPAKETMQECASEFISFVTEEATEQCRKEKRKTINGDDICSAMKTLGLDEYADAMKRYLCRYREH 145 5899**************************************************************************************9 PP NF-YB 94 ege 96 e++ PDK_30s1021181g006 146 EEK 148 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.9E-45 | 53 | 159 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.71E-35 | 56 | 159 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-26 | 60 | 123 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.2E-15 | 87 | 105 | No hit | No description |
PRINTS | PR00615 | 4.2E-15 | 106 | 124 | No hit | No description |
PRINTS | PR00615 | 4.2E-15 | 125 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MPEGPRRNVS VFDEFRFFSS LKMDSNTDGQ PYLRGHDCNV TIDKAGATSY ECINGQNHLL 60 PIANVGRIMK QALPNNARIS KPAKETMQEC ASEFISFVTE EATEQCRKEK RKTINGDDIC 120 SAMKTLGLDE YADAMKRYLC RYREHEEKAT SMKRNKPAQI NVRNELPVFR SNQYRDRSPS 180 KSPCNVAKEK KFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-37 | 56 | 144 | 4 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-37 | 56 | 144 | 4 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008796244.1 | 1e-144 | nuclear transcription factor Y subunit B-3-like | ||||
TrEMBL | A0A2H3YBN7 | 1e-143 | A0A2H3YBN7_PHODC; nuclear transcription factor Y subunit B-3-like | ||||
STRING | XP_008796244.1 | 1e-144 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2917 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 6e-43 | nuclear factor Y, subunit B5 |