PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1016001g010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | YABBY | ||||||||
Protein Properties | Length: 229aa MW: 25056.4 Da PI: 7.3277 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 231 | 2.9e-71 | 16 | 191 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...........lleelkveeenlksn 85 seq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++ a + l++ + + l +++ +l+sn PDK_30s1016001g010 16 PSEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLGLGHPFLAPshhnlldeipcPPPSLPMDQPSLNSN 106 68****************************************8777665444444445566665556775444443233444555555555 PP YABBY 86 vekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ +++++++++ + ++ee+p+ p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl PDK_30s1016001g010 107 NSNGANHNHNHNTMAPAKGTEEELPQNPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 191 5555544444444444889999*************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-72 | 16 | 191 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.44E-7 | 136 | 184 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.6E-4 | 140 | 183 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSVCAAFSLD QLSPPPSEQL CYVHCNFCDT VLAVSVPCSS LFKTVTVRCG HCTNLLSVNM 60 RGLLLPAANQ LGLGHPFLAP SHHNLLDEIP CPPPSLPMDQ PSLNSNNSNG ANHNHNHNTM 120 APAKGTEEEL PQNPVANRPP EKRQRVPSAY NRFIKDEIQR IKAGNPDITH REAFSAAAKN 180 WAHFPHIHFG LMPDQGLRKN SVRQQEGEDV LLKDGFYAAA AANMGITPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008796843.1 | 1e-168 | protein YABBY 4-like | ||||
Swissprot | Q01JG2 | 5e-90 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 5e-90 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A2H3YCT9 | 1e-166 | A0A2H3YCT9_PHODC; protein YABBY 4-like | ||||
STRING | XP_008796843.1 | 1e-167 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-82 | YABBY family protein |
Publications ? help Back to Top | |||
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