PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1014611g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | G2-like | ||||||||
Protein Properties | Length: 424aa MW: 46476.7 Da PI: 6.9288 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.4 | 3.3e-28 | 152 | 206 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++v+SHLQkYR++ PDK_30s1014611g003 152 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNVASHLQKYRSH 206 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.055 | 149 | 208 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-27 | 150 | 209 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-18 | 150 | 209 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-26 | 152 | 206 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-8 | 155 | 204 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MLAVSPPRGS NGEERDGEVG GLAGNFSDDT LLEDINFDDL FMGFDDRDIL PDLEVDPAEF 60 FSDGPRGGEA SSGMVMAVES AVGSDGGGQE NGLMEGEMKV EKDLSRREEV TSATTKEDTV 120 AVAAEVRSPS SEADRGRKST ATATKNSQGK RKVKVDWTPE LHRRFVQAVE QLGVDKAVPS 180 RILELMGIDC LTRHNVASHL QKYRSHRKHL LAREKEAASW SQRRQIYSPC GASAKRDMNP 240 WVAPTIGFPP PPPPPPPIQS FRPLHVWGHP TADPPLVHMW PRHLALRTPT PPWAPQPPLP 300 PPSNPSYWHH HYHKGPREGW VPHTLTQGTP CFPQAFPTRF PAPPVPGVLP YPFYRALLPP 360 ATKHSVPQLQ LDAYPSKESI DAAIGDALAK PWSPLPLGLK PPSLESVLVE LQRQGVSKVP 420 PMCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-16 | 149 | 204 | 2 | 57 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961716 | 8e-53 | EU961716.1 Zea mays clone 237829 dnaJ subfamily B member 5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008783138.1 | 0.0 | probable transcription factor GLK1 | ||||
Swissprot | Q5Z5I4 | 1e-96 | GLK1_ORYSJ; Probable transcription factor GLK1 | ||||
TrEMBL | A0A2H3XFT7 | 0.0 | A0A2H3XFT7_PHODC; probable transcription factor GLK1 | ||||
STRING | XP_008783138.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 3e-74 | GBF's pro-rich region-interacting factor 1 |
Publications ? help Back to Top | |||
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