PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1014391g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HD-ZIP

Protein Properties

Length: 279aa MW: 31813.5 Da PI: 9.7194

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1014391g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.2	1.2e-17	114	168	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+++++++q++ Le F k++++ ++ +LA +lgL+ +qV vWFqNrRa++k+ PDK_30s1014391g003 114 KKRRLSDQQVKFLEMSFVKEKKLESGRKVHLAGELGLDPKQVAVWFQNRRARYKN 168 56689************************************************95 PP
2	HD-ZIP_I/II	116.8	1.2e-37	114	205	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls++qvk+LE+sF +e+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k+lE++y +Lk+a+d+++ e+++Le+e +L+e+l+ PDK_30s1014391g003 114 KKRRLSDQQVKFLEMSFVKEKKLESGRKVHLAGELGLDPKQVAVWFQNRRARYKNKHLEEEYLKLKSAHDTVVVEKCHLENELMKLKEKLA 204 9***************************************************************************************997 PP HD-ZIP_I/II 93 e 93 e PDK_30s1014391g003 205 E 205 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.082	109	169	IPR001356	Homeobox domain
SMART	SM00389	2.3E-16	112	173	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-16	114	175	IPR009057	Homeodomain-like
CDD	cd00086	7.33E-15	114	170	No hit	No description
Pfam	PF00046	4.8E-15	114	168	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-17	116	175	IPR009057	Homeodomain-like
PRINTS	PR00031	4.7E-5	140	149	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.7E-5	149	165	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MAVQLAYRQR LTVLTIDRHD TDWPLWQLYI RYVVSVIHRP CGPTLTPWPY NWLLPGNWCM 60 SYRPSIKGPP LKTLRQADLL QAVSGGDQQP HLGETRTRRK RRKAKVDGAG GEAKKRRLSD 120 QQVKFLEMSF VKEKKLESGR KVHLAGELGL DPKQVAVWFQ NRRARYKNKH LEEEYLKLKS 180 AHDTVVVEKC HLENELMKLK EKLAEAEVSM RKLSQAVNGA SGYNGGGGEG EGSPTSSFST 240 VTYHPLVGEF GVDGEADLMY IPEYNFSNYM MEWGNLFGM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	116	RKRRKAKVDGAGGEAKKRR
2	100	116	RRKAKVDGAGGEAKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010905085.1	3e-95	homeobox-leucine zipper protein HOX12
Swissprot	Q7XI85	3e-52	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	A0A2H3Y9T6	2e-82	A0A2H3Y9T6_PHODC; homeobox-leucine zipper protein HOX12-like
STRING	XP_008795628.1	4e-83	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	5e-35	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]