PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1011711g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ZF-HD
Protein Properties Length: 272aa    MW: 29900.1 Da    PI: 8.4244
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1011711g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.28.6e-3371126460
         ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         ++Y+eClkNhAas+Gg+a+DGCgEfmps geegt +alkC+AC+CHRnFHR+eve e
  PDK_30s1011711g001  71 LKYRECLKNHAASIGGNATDGCGEFMPS-GEEGTLEALKCSACNCHRNFHRKEVEGE 126
                         68*************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.2E-3071123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2471126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-3172123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.27873122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.97E-20194264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-31196265IPR009057Homeodomain-like
TIGRFAMsTIGR015659.2E-28203259IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDLSGHEGEI PIPITSAYVG GHGHTIIHDT PPLHHHPSNG PPPPPPLPTA TSEDHQHHPT  60
NPYSSKKGVV LKYRECLKNH AASIGGNATD GCGEFMPSGE EGTLEALKCS ACNCHRNFHR  120
KEVEGESSSC DCFHHLKGRK VLGQKGLLIS GPEAFGYAPA GNSLIPRASP HHMIMPLGAL  180
QTSESDDMEG FGGGAMVRPP MVKKRFRTKF TPEQKEKMLS FAEKVGWRLQ KQEESVVQQF  240
CQEIGVKRRV LKVWMHNNKH NLAKKSPPLQ LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-252042611875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912718.10.0zinc-finger homeodomain protein 4
RefseqXP_010912720.10.0zinc-finger homeodomain protein 4
RefseqXP_029118422.10.0zinc-finger homeodomain protein 4
SwissprotQ9M9S02e-74ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2H3Z6U71e-173A0A2H3Z6U7_PHODC; zinc-finger homeodomain protein 4-like
STRINGXP_008808961.11e-174(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.18e-75homeobox protein 21