PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1008861g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GRF | ||||||||
Protein Properties | Length: 363aa MW: 38622.4 Da PI: 9.1791 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.7 | 2.4e-24 | 248 | 292 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PDK_30s1008861g005 248 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 292 79****************************************985 PP | |||||||
2 | QLQ | 52.5 | 1.5e-18 | 178 | 214 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK + an+P+Pp Ll i++ PDK_30s1008861g005 178 GPFTPSQWMELEHQALIYKFIDANVPIPPSLLISIRR 214 59******************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.7E-11 | 178 | 214 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.425 | 179 | 214 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-14 | 179 | 212 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.455 | 248 | 292 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.1E-20 | 249 | 291 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MEGLVGGASS EGGSLFSSSL AFSDSEIKQA GVFGSSFLKH ARPGGSEEND WRFPKMARTE 60 AMAVPTNITR GAASLYRSNS HSLFPEGEQM LSFSSTPSSK PDAMVLSSDG TLPYYHHPSA 120 SSSAPYFRNA GMITLPLCSS GAMLDLWVFG GCVYGAGLGV GVSGSNANMN GVLARLRGPF 180 TPSQWMELEH QALIYKFIDA NVPIPPSLLI SIRRSLSPSG YPPISAGSFG SSALGWGPFH 240 LGYSGNADPE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN RGRHRSRKHV EGHAGHAAKA 300 MPIIAPSQSA SAVSGSGSSS SLTVAQQQTK SLQPNAADPC PAPLNRYNQI NAYHFVFLTS 360 CIV |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063759 | 5e-33 | BT063759.1 Zea mays full-length cDNA clone ZM_BFc0104G18 mRNA, complete cds. | |||
GenBank | BT064538 | 5e-33 | BT064538.1 Zea mays full-length cDNA clone ZM_BFc0179B15 mRNA, complete cds. | |||
GenBank | BT067085 | 5e-33 | BT067085.1 Zea mays full-length cDNA clone ZM_BFb0185D09 mRNA, complete cds. | |||
GenBank | BT088016 | 5e-33 | BT088016.1 Zea mays full-length cDNA clone ZM_BFb0357C16 mRNA, complete cds. | |||
GenBank | EU969909 | 5e-33 | EU969909.1 Zea mays clone 337118 growth-regulating factor 1 mRNA, complete cds. | |||
GenBank | EU973647 | 5e-33 | EU973647.1 Zea mays clone 403513 growth-regulating factor 1 mRNA, complete cds. | |||
GenBank | KJ726877 | 5e-33 | KJ726877.1 Zea mays clone pUT3418 GRF transcription factor (GRF1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008790288.1 | 0.0 | growth-regulating factor 6-like | ||||
TrEMBL | A0A2H3XY57 | 0.0 | A0A2H3XY57_PHODC; growth-regulating factor 6-like | ||||
STRING | XP_008790288.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 4e-45 | growth-regulating factor 1 |