PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr042773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | DBB | ||||||||
Protein Properties | Length: 186aa MW: 20532.5 Da PI: 7.4075 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.6 | 2.2e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC+ C ++ H Pbr042773.1 4 LCDSCESAAAIVFCAADEAALCRACDEKVH 33 7**************************998 PP | |||||||
2 | zf-B_box | 26.4 | 1.4e-08 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 e ++C+ +e+ ++ ++Ce +++ lC +C l H g H Pbr042773.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDLIVHVGgkrmH 91 789**************************99895544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.5E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.381 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.08E-6 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 8.6E-6 | 3 | 42 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.759 | 51 | 84 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.2E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.9E-6 | 52 | 85 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.26E-6 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MRTLCDSCES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLATP SEVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD LIVHVGGKRM HGRYLVLRQR VEFPGDKPGN IEDPASQPTD 120 PGETRRIQQP HPPRMTIGEN LQNRRVSPIR ASDANADAHV KMDKKLIDLN MKPHRMHGQA 180 SNKED* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr042773.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009378203.1 | 1e-136 | PREDICTED: B-box zinc finger protein 19-like | ||||
Swissprot | C0SVM5 | 2e-75 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A498HY22 | 1e-125 | A0A498HY22_MALDO; Uncharacterized protein | ||||
TrEMBL | D9ZIX1 | 1e-129 | D9ZIX1_MALDO; COL domain class transcription factor | ||||
STRING | XP_009378203.1 | 1e-135 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-77 | DBB family protein |