PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr042646.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 228aa MW: 24067 Da PI: 8.9213 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.3 | 1.2e-08 | 31 | 56 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ Pbr042646.1 31 KTRLCNKYNTVEGCKFGDKCHFAHGE 56 8*********99************96 PP | |||||||
2 | zf-CCCH | 34.8 | 2.8e-11 | 194 | 219 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++t+lC +f + GtC +GdrC+FaHg+ Pbr042646.1 194 FRTKLCENFTK-GTCTFGDRCHFAHGQ 219 589********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-14 | 27 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-8 | 28 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0023 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.535 | 29 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-6 | 31 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.48E-14 | 91 | 171 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 8.3E-10 | 99 | 169 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 2.5E-14 | 99 | 169 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 13.565 | 100 | 164 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.12E-13 | 102 | 164 | No hit | No description |
Pfam | PF00013 | 1.9E-10 | 102 | 166 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-16 | 191 | 224 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-9 | 192 | 223 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-7 | 193 | 219 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.99 | 193 | 220 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.9E-9 | 194 | 219 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MTGSNPTHPP PPRNSAAPPS FPDGSSPPAV KTRLCNKYNT VEGCKFGDKC HFAHGEWELG 60 RPTAQSYEDP RAGAGFPGRM GGRMESAPPA HGAVASFGAT ATAKISVDAS LAGAIIGKNG 120 VHSKQICRVT GAKLSIREHE TDHKLRNIEL EGTLDQIKDA SAMVRELIGN VSSGAGPHNM 180 RNPAMSASSP ASNFRTKLCE NFTKGTCTFG DRCHFAHGQE ELRRSAM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr042646.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009375050.1 | 1e-167 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 2e-81 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A498K8X9 | 1e-166 | A0A498K8X9_MALDO; Uncharacterized protein | ||||
STRING | XP_009375050.1 | 1e-166 | (Pyrus x bretschneideri) | ||||
STRING | XP_008344684.1 | 1e-166 | (Malus domestica) | ||||
STRING | XP_008363342.1 | 1e-166 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-61 | C3H family protein |