PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042613.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ZF-HD
Protein Properties Length: 320aa    MW: 35129.6 Da    PI: 9.8675
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042613.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.82e-31110166259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +++rY+eClkNhAa+ Ggh++DGCgEfmps g+e ta alkCaAC+CHRnFHR+e + 
  Pbr042613.1 110 SRIRYRECLKNHAANSGGHVLDGCGEFMPS-GDEDTAGALKCAACECHRNFHRKEIDG 166
                  579**************************9.7777*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-21111171IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.0E-29112164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-28113164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.96114163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.4E-29248317IPR009057Homeodomain-like
SuperFamilySSF466891.16E-17249316IPR009057Homeodomain-like
PROSITE profilePS500719.118253317IPR001356Homeobox domain
TIGRFAMsTIGR015655.5E-27255312IPR006455Homeodomain, ZF-HD class
CDDcd000860.00377256318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MELRGRDHKV IGRMPSTLTY TPPPHRDSSS SKLSSSPAFS SAGHHGSNTI LFTHPPHQTL  60
DRSRRDPDPN PDLVPSPVVV TPSATATIAS GSNFKAPPAP PPPPPSAAAS RIRYRECLKN  120
HAANSGGHVL DGCGEFMPSG DEDTAGALKC AACECHRNFH RKEIDGEYVS NNYYVLNHQQ  180
QNSRRDSALT RLPVLASPPR ALPVYHSTAG GPSQPMMMTF GGGGGVVAES SSEDLNMYNK  240
LFRGANYAEE AQGSKKRFRT KFSQEQKEKM TDVAEKLGWR IQKHDEQEVQ KLCSEVGIKR  300
QVFKVWMHNN KKAMKKKQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-232543131675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042613.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347543.10.0PREDICTED: zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW72e-69ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLM5VV111e-110M5VV11_PRUPE; Uncharacterized protein
STRINGXP_009347543.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.15e-64homeobox protein 24