PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042561.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 349aa    MW: 38312.2 Da    PI: 6.0129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042561.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.5e-10201248455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN ++  L+el+P +    +k   Ka +L + +++++sLq
  Pbr042561.1 201 SHSLAERARREKINARMKLLQELVPGC----NKISGKALVLDEIINHVQSLQ 248
                  8**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-16195265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.88E-10195252No hitNo description
PROSITE profilePS5088814.996197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15197262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7201248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-9203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDPTGATVPG STLPGPELES LQFREEIHQL ITVPPENASS FTALLELPPT QAMELLHLSP  60
ESNSAPLLAG VSADPQHAPY VQQPPFNSSL TFPPTSPLTE RTAKFSIFAG DGSPDISSVP  120
SKSGAELEKV KTEPAEIDSN PNSSQLTLDE TKNNQRNSAK RKEREKKIKA PTKKCKTEIK  180
EDAEKMPYVH VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCNKI SGKALVLDEI  240
INHVQSLQHQ VEFLSMRLAA VNPGIDFNLN SILAAESGPL MESNFAGMVT PLMWPEVSIN  300
AHRQPFQQQW HFDTLQQPGW GREEENHTFI TPEPPLISCD SSANSGRP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042561.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347492.10.0PREDICTED: transcription factor bHLH48-like
SwissprotQ3EAI12e-91BH060_ARATH; Transcription factor bHLH60
SwissprotQ8VZ022e-91BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A498I5830.0A0A498I583_MALDO; Uncharacterized protein
STRINGXP_009347492.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]