PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr042554.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 332aa MW: 36500.7 Da PI: 9.6423

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr042554.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.3e-13	243	288	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq Pbr042554.1 243 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 288 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.25	237	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-15	240	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.12E-12	241	290	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.2E-14	242	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-11	243	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.5E-10	243	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDSNTHQPNS GMLRFRSAPS SLLANFADGG DSGLHSKNPV EGSLESERLF SRFANYSHTN 60 DSDSWPSSFQ ELDDKSVVTA TKAAVPASRV SSQGGYSGLL PPHYPRQSSF NGGYGLAGSG 120 AMEHHHTAAN KSLHSTSNVV RQSSSPAGLF SNTSVQNGFP FGTWNNSSNF PENIGGLKRD 180 HHDGKLFSVD QGGDLENRFH VLSHHLSLPK TSAEMAMEKF LQLQDSVPCK VRAKRGCATH 240 PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA VDYIKDLQKQ FKVSNKLNRE 300 TLHCGQALSV VTHRSLLFCR RLAMFEQTAS V*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr042554.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018500964.1	0.0	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	3e-87	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A498HZ33	0.0	A0A498HZ33_MALDO; Uncharacterized protein
STRING	XP_009345105.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5177	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-89	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]