PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042526.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 455aa    MW: 50556.2 Da    PI: 6.5427
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042526.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-073874202154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp++e++++L +++gL+ +q+ +WF N+R +
  Pbr042526.1 387 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
                  469*****************************87 PP
2ELK28.73e-10341362122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  Pbr042526.1 341 ELKHELKQGYKEKIVDIREEIL 362
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.5E-18176220IPR005540KNOX1
PfamPF037902.1E-16179219IPR005540KNOX1
SMARTSM012562.8E-28229284IPR005541KNOX2
PfamPF037913.5E-21233283IPR005541KNOX2
PROSITE profilePS512139.969341361IPR005539ELK domain
SMARTSM011886.1E-4341362IPR005539ELK domain
PfamPF037891.1E-6341362IPR005539ELK domain
PROSITE profilePS5007111.726361424IPR001356Homeobox domain
SuperFamilySSF466891.45E-15363427IPR009057Homeodomain-like
SMARTSM003894.7E-11363428IPR001356Homeobox domain
CDDcd000863.23E-12364425No hitNo description
Gene3DG3DSA:1.10.10.604.9E-25368425IPR009057Homeodomain-like
PfamPF059201.3E-17381420IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAYHNHLSQD LPLHHFTDQT HHQHQQYHSD QPDQNSKPPE PHHPFQPAPN WLNSALLRNF  60
TNTDTNPTNS NNANNNGGGV SNFLNLHVTA SDSAASQASN QWLSQSHRPI LHRNHSDVID  120
DVTVAGDSMI AAAMSHDSAD LKPDTILNKN DGGVVESGIP GGGGGGDGGV MNWQNARHKA  180
EILAHPLYEP LLSAHVACLR IATPVDQLPR IDAQLAQSQN VVAKYSALGN GMVGDDKELD  240
QFMRNYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SLTGVSPGEG TSATMSDDED  300
DQVDSDANLF DGGMEGHDSM GFGPLIPTES ERSLMERVRQ ELKHELKQGY KEKIVDIREE  360
ILRKRRAGKL PGDTTSVLKA WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR  420
NWHSNPSTST VLKSKRKRKK KAHSDSDVAI INPI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417439RKRNWHSNPSTSTVLKSKRKRKK
2434440KRKRKKK
3435439RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042526.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ719800.0Z71980.1 M.domestica mRNA for knotted1-like homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362328.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X3
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A498JDK60.0A0A498JDK6_MALDO; Uncharacterized protein
STRINGXP_009362326.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-177KNOTTED1-like homeobox gene 3