PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr042479.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 394aa MW: 44635.4 Da PI: 7.3902 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.6 | 5.1e-53 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++++ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + Pbr042479.1 9 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNQMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN- 104 69****************************.99**************963433332556*************************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 + +++g++ktLvfy+grap+g+ktdW+mheyrle Pbr042479.1 105 TFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 138 8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-59 | 7 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.586 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-28 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MANSSSGGVP PGFRFHPTDE ELLHYYLKKK VSFQKFDMEV IREVDLNQME PWELQERCRI 60 GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNTFKKIG MRKTLVFYRG 120 RAPHGQKTDW IMHEYRLEDG DDPQGNLSSE DGWVICRVFK KKNLFKVANE GGSSSMNSSE 180 HQQLNNASSN SQLQARSFMH SHRDNQYLLR QQHHAATQEL SNNSSLHYAH LQPPPHYSLF 240 QYQALIPTLA HKHLSSYDDY SSQLPSDDSP AHGMVKQLMT NPRDCESGSE GLRYQPCEPG 300 LEVGTCEPDH QPNMVAGGAG TAGGRDNNHD HQGMSEWAML DRLVTSHDLG NDKDSSSKGT 360 ARYADANAPS SVNQINHQHL SLRGEMDFWG YAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-51 | 9 | 163 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-51 | 9 | 163 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-51 | 9 | 163 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-51 | 9 | 163 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-51 | 9 | 163 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 5e-51 | 9 | 163 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-51 | 9 | 163 | 17 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr042479.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210382 | 4e-43 | AC210382.1 Populus trichocarpa clone POP018-P22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347397.1 | 0.0 | PREDICTED: protein BEARSKIN2-like | ||||
Swissprot | Q9SV87 | 1e-151 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A498IWC7 | 0.0 | A0A498IWC7_MALDO; Uncharacterized protein | ||||
STRING | XP_009347397.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8752 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-148 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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