PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr042171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 157aa MW: 18043.8 Da PI: 9.7398 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.3 | 2.7e-44 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lpp frFh tdeelv++yL++k+ ++++++ +i e+d+yk++P++Lp + +ekewyfFs+rd+ky++++r+nra+ sgyWkatg dk++ + + Pbr042171.1 8 LPPRFRFHLTDEELVKHYLCQKCVSQPISV-LIIGEIDLYKYDPRELPGLALYGEKEWYFFSPRDRKYPNSSRPNRAAGSGYWKATGVDKPIGH--PK 102 6899**************************.77***************6555679*************************************99..67 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+ap ekt+W++heyrl Pbr042171.1 103 SLGIKKALVFYAGKAPPDEKTNWILHEYRL 132 89**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-49 | 5 | 137 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.882 | 8 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-23 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MSSVDFQLPP RFRFHLTDEE LVKHYLCQKC VSQPISVLII GEIDLYKYDP RELPGLALYG 60 EKEWYFFSPR DRKYPNSSRP NRAAGSGYWK ATGVDKPIGH PKSLGIKKAL VFYAGKAPPD 120 EKTNWILHEY RLADVDRSPR KKNSLRVYTL LSLLLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-61 | 2 | 132 | 9 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr042171.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347270.1 | 1e-106 | PREDICTED: NAC domain-containing protein 2-like | ||||
Refseq | XP_009347271.1 | 1e-106 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 7e-82 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | D9ZJ92 | 2e-89 | D9ZJ92_MALDO; NAC domain class transcription factor | ||||
STRING | XP_009347270.1 | 1e-105 | (Pyrus x bretschneideri) | ||||
STRING | XP_009347271.1 | 1e-105 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 4e-84 | NAC family protein |