PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042160.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 348aa    MW: 39242.8 Da    PI: 5.2238
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042160.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.6e-28958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  Pbr042160.2  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                 79********************************************9997 PP
2K-box23.22.8e-09121190978
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                  + +++ e+lqqe+  L++++++ ++++R +  + L+  s  eL++ e+ L + l+++ ++K+ ll ++++
  Pbr042160.2 121 AVSSEIEELQQEIGGLQQQLQMAEEQIRIYEPDPLKITSTVELESCEKSLMDTLTRVMQRKEYLLSNHLS 190
                  557889***********************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.899161IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-30280IPR002100Transcription factor, MADS-box
CDDcd002651.43E-36275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-26323IPR002100Transcription factor, MADS-box
PfamPF003197.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVFTRY INLPDQEREH AIIFPDHNKH PDLQNKEYLL RTLQQLRSEN DIALQLANPT  120
AVSSEIEELQ QEIGGLQQQL QMAEEQIRIY EPDPLKITST VELESCEKSL MDTLTRVMQR  180
KEYLLSNHLS SYDSSGIQQV LPGSFENEVA GWLSSAGHNQ AQIYDASAPL EHQLRNLSST  240
LYDPFSQGQS SNADPSTMGQ CHVSVTNDSD GELPLWHQAY TTSSGHHSTL IPPTLLPQYQ  300
NSVVGSNMPE IMPHEQVEIP VGNSSLQPYN EVADYNHENK VPQLNGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16189190MEF2C
5f28_B2e-16189190MEF2C
5f28_C2e-16189190MEF2C
5f28_D2e-16189190MEF2C
6bz1_A2e-16184185MEF2 CHIMERA
6bz1_B2e-16184185MEF2 CHIMERA
6bz1_C2e-16184185MEF2 CHIMERA
6bz1_D2e-16184185MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042160.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347212.10.0PREDICTED: agamous-like MADS-box protein AGL104 isoform X2
SwissprotQ9LM461e-132AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A498I4240.0A0A498I424_MALDO; Uncharacterized protein
STRINGXP_009347212.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-124AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]