PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr042040.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 377aa    MW: 42538.9 Da    PI: 5.6399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr042040.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.5e-08188230754
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++ r RR++i ++ +eL +l+P a     +K++ ae+L+ A +Y+k L
  Pbr042040.1 188 IAARERRRKITEKTQELGRLIPGA-----TKMNTAEMLQAAYKYVKFL 230
                  56799******************9.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.722181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-11185239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-11186238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.78E-8187235No hitNo description
SMARTSM003538.5E-9187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-6189230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAMSTATFCP IDDWGSLQLL NPPEMNMLSL PTQQKLQAAS SGIFDLQDYY YSLANSTNPE  60
YTCIDPFFQP YESSSENFLL PDFCSPTDNI NLALLSPATC PTLDEYDFSY QPYPKCQKLF  120
HDQQVQYCNS NFVVAATPNY FNAYDPFFQS EILVPTQTHE VQIQNQPEAA KLDNKVVSGT  180
GTVSPQSIAA RERRRKITEK TQELGRLIPG ATKMNTAEML QAAYKYVKFL RAQVSVLKLM  240
TDSPIQQGED ANAENSYRVA KISNYSHPWH ASMYNVDIFS SKTGEWRVSS ITAPYTLLFH  300
MLPGNIVRLA YNGMLFLMGT VITRVLNLLM MALLIYNVLL YLMMRSWELG LCVCAKDVCN  360
CATTMNIIHL FRLFGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr042040.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362282.10.0PREDICTED: transcription factor bHLH52-like
TrEMBLA0A498JSR11e-176A0A498JSR1_MALDO; Uncharacterized protein
STRINGXP_009362282.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.13e-17bHLH family protein