PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr041991.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 361aa MW: 42397.6 Da PI: 4.7004

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr041991.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43	1.2e-13	120	205	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++ v L+e+ ++ +l+r++l+ +W ev+ k+ ++ ++er+ qCk+ ++ l+++ykk+ke +++ +ss+++yf+++e Pbr041991.1 120 EWTEHAVFMLLEVWGDRFLQLGRKSLRSDDWHEVAYKVsEASKIERTDGQCKSMLDMLKRKYKKEKEKMEEM-GLNSSKWAYFKKME 205 5***********************************677899**********************96.89999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-17	119	206	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MDDTVDDPRY HPKSYSASHH NSSGRRKIHT RNTQYAPPVP NRYVVEDNYE LDDFDEGNGR 60 EDQYNDEDDK HRHGFNRNFD AEEDFERLPK KRKAKNLESR YEFAPRVRPN WEPGFRAEEE 120 WTEHAVFMLL EVWGDRFLQL GRKSLRSDDW HEVAYKVSEA SKIERTDGQC KSMLDMLKRK 180 YKKEKEKMEE MGLNSSKWAY FKKMEMLMAS SSRQEFGLAC GIDSGEYVFM NTRVYLERSN 240 GFDEMRDSPG ESETDDDENG NDDFDVFPPR MAGMHGGDGD EGSSYRVLAD SIHKFGEIYE 300 KIESSKRQQM RELEKMRKNF NKELELQKKQ ILERAQVEIA KIQEADDDDE TDVSVEDLSE 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MDDTVDDPRY HPKSYSASHH NSSGRRKIHT RNTQYAPPVP NRYVVEDNYE LDDFDEGNGR  60
EDQYNDEDDK HRHGFNRNFD AEEDFERLPK KRKAKNLESR YEFAPRVRPN WEPGFRAEEE  120
WTEHAVFMLL EVWGDRFLQL GRKSLRSDDW HEVAYKVSEA SKIERTDGQC KSMLDMLKRK  180
YKKEKEKMEE MGLNSSKWAY FKKMEMLMAS SSRQEFGLAC GIDSGEYVFM NTRVYLERSN  240
GFDEMRDSPG ESETDDDENG NDDFDVFPPR MAGMHGGDGD EGSSYRVLAD SIHKFGEIYE  300
KIESSKRQQM RELEKMRKNF NKELELQKKQ ILERAQVEIA KIQEADDDDE TDVSVEDLSE  360
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	185	KRKYKKEKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr041991.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009347160.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A498HUX2	0.0	A0A498HUX2_MALDO; Uncharacterized protein
STRING	XP_009347160.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-80	Trihelix family protein