PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr041959.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 1154aa MW: 128069 Da PI: 8.1557

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr041959.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.1	3.3e-40	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hsk+++ lv++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+qa Pbr041959.1 148 MCQVDNCKEDLSNAKDYHRRHKVCEIHSKSTKSLVAKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQA 225 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-33	142	210	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.881	146	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.85E-37	147	226	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.2E-28	149	222	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1154 aa Download sequence Send to blast
MENAGGQVAA PIYFHQTLSG RFCDSPAMGR KRDHPYQGPN YQHPHLQQLR VTNPGNNWNP 60 NVWDWDAVRF VAKPLDSEME QLGTTFTTEQ RNKEEATGPV KNMAEDEHDE SLQLNLAGGF 120 TSVEEPVPRP NKRVRSGSPG NGNGSYPMCQ VDNCKEDLSN AKDYHRRHKV CEIHSKSTKS 180 LVAKQMQRFC QQCSRFHLLS EFDEGKRSCR RRLAGHNRRR RKTQAEDVTS RLTLPGGGDN 240 KSIGNIDIVN LVADIARPQG XXXXXXXXXX XXXXXXVGKN DVRNINGSSV LDREQLLQIL 300 SKMNSLPLPA DLAAKLPNLE SLTRKASELL SLDLQNKLNG RASTATMDLL TVLSATLATS 360 APEALAMLSQ KCSQSSDSEK TKLTCSDQAA GPNLHKIPPQ EIHSAGGERS STSYQSPMED 420 SDCQVQETRV NLPLQLFSSS PENDSLPKLA SSRKYFSSDS SNPTEDRSPS SSPPVVHTLF 480 PMKSLAETVK SEKLLVSKEV SANPDSSRTC RSNMPFDLFR GSNRGAEATS IQSFPNQPGY 540 TSSSSDHSPS SLNSDAQDRT GRILFKLFDK DPSHLPGTLR TQIYNWLSNS PSEMESYIRP 600 GCVILSVYVS MPPASWEQLE ENLVQHASSL VQSSDSDFWR SGRFLVNTGR QLASHKDEKI 660 RTCKAWRSCS SPELISVAPL AVVGGQETSL LLRGRNLNTL GTRIHCTYMG GYTSKEATGS 720 AYHGMMFDEI NLGSFQIHDA SPGVLGRCFI EVENGFRGNS FPVIIADATI CRELKVLESV 780 FDAESKVCDV ISEDESHDYG RPTSREEALH FLNELGWLFQ RKRICSMLQE PHYALSRFKF 840 LLTFSVEKDC CALVKTLLDI LFERNFDSDT LSGGSVMLSD MQLLNRAVKR RCRKMVDLLI 900 NYSIVNSDID KRYIFPPNLA GPGSMTPLHL AACMSSTDDM IDALTNDPQE IGLNCWNSLL 960 DASGQSPYAY ALMRNNYSYN NLVARKLADR RNSQVTVTIG NERDQPQMSM ELEHRTNTRS 1020 RQGSRSCTKC AIAATKYSRR VPGAQGLLQR PLIHSMLAIA AVCVCVCLFL RGSPDIGLVA 1080 PFKLALWSRW KIEVFCLAAF KRMRRGVMAD LINKRILNQA QVFGDSDAGC LSPTNLRHVH 1140 SLGLLCSFVS RNG*

Sequence ? help Back to Top

Protein Sequence Length: 1154 aa Download sequence Send to blast

MENAGGQVAA PIYFHQTLSG RFCDSPAMGR KRDHPYQGPN YQHPHLQQLR VTNPGNNWNP  60
NVWDWDAVRF VAKPLDSEME QLGTTFTTEQ RNKEEATGPV KNMAEDEHDE SLQLNLAGGF  120
TSVEEPVPRP NKRVRSGSPG NGNGSYPMCQ VDNCKEDLSN AKDYHRRHKV CEIHSKSTKS  180
LVAKQMQRFC QQCSRFHLLS EFDEGKRSCR RRLAGHNRRR RKTQAEDVTS RLTLPGGGDN  240
KSIGNIDIVN LVADIARPQG XXXXXXXXXX XXXXXXVGKN DVRNINGSSV LDREQLLQIL  300
SKMNSLPLPA DLAAKLPNLE SLTRKASELL SLDLQNKLNG RASTATMDLL TVLSATLATS  360
APEALAMLSQ KCSQSSDSEK TKLTCSDQAA GPNLHKIPPQ EIHSAGGERS STSYQSPMED  420
SDCQVQETRV NLPLQLFSSS PENDSLPKLA SSRKYFSSDS SNPTEDRSPS SSPPVVHTLF  480
PMKSLAETVK SEKLLVSKEV SANPDSSRTC RSNMPFDLFR GSNRGAEATS IQSFPNQPGY  540
TSSSSDHSPS SLNSDAQDRT GRILFKLFDK DPSHLPGTLR TQIYNWLSNS PSEMESYIRP  600
GCVILSVYVS MPPASWEQLE ENLVQHASSL VQSSDSDFWR SGRFLVNTGR QLASHKDEKI  660
RTCKAWRSCS SPELISVAPL AVVGGQETSL LLRGRNLNTL GTRIHCTYMG GYTSKEATGS  720
AYHGMMFDEI NLGSFQIHDA SPGVLGRCFI EVENGFRGNS FPVIIADATI CRELKVLESV  780
FDAESKVCDV ISEDESHDYG RPTSREEALH FLNELGWLFQ RKRICSMLQE PHYALSRFKF  840
LLTFSVEKDC CALVKTLLDI LFERNFDSDT LSGGSVMLSD MQLLNRAVKR RCRKMVDLLI  900
NYSIVNSDID KRYIFPPNLA GPGSMTPLHL AACMSSTDDM IDALTNDPQE IGLNCWNSLL  960
DASGQSPYAY ALMRNNYSYN NLVARKLADR RNSQVTVTIG NERDQPQMSM ELEHRTNTRS  1020
RQGSRSCTKC AIAATKYSRR VPGAQGLLQR PLIHSMLAIA AVCVCVCLFL RGSPDIGLVA  1080
PFKLALWSRW KIEVFCLAAF KRMRRGVMAD LINKRILNQA QVFGDSDAGC LSPTNLRHVH  1140
SLGLLCSFVS RNG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-29	141	222	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	885	890	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr041959.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009347080.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Refseq	XP_018500865.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A498HMP4	0.0	A0A498HMP4_MALDO; Uncharacterized protein
STRING	XP_009347080.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9694	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]