PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041863.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 383aa    MW: 42811.3 Da    PI: 9.2462
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041863.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.31.1e-1468127155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a+ k++g
  Pbr041863.1  68 SRFRGVSRHRWTGRFEAHLWDkLSWNStqkKKgKQVYLGAYDEEEPAARAYDLAAVKYWG 127
                  789******************888888886448************************998 PP
2AP256.57.1e-18170221155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa+a++ a+ +++g
  Pbr041863.1 170 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 221
                  89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-1668137IPR016177DNA-binding domain
CDDcd000181.69E-1768137No hitNo description
PfamPF008479.4E-1268127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-1569136IPR001471AP2/ERF domain
SMARTSM003801.5E-2469141IPR001471AP2/ERF domain
PROSITE profilePS5103219.25669135IPR001471AP2/ERF domain
PRINTSPR003672.7E-57081IPR001471AP2/ERF domain
CDDcd000181.68E-23170231No hitNo description
PfamPF008472.6E-13170221IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18170231IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-18171230IPR001471AP2/ERF domain
SMARTSM003808.0E-26171235IPR001471AP2/ERF domain
PROSITE profilePS5103218.742171229IPR001471AP2/ERF domain
PRINTSPR003672.7E-5211231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEFMMVRNEE NAGRRRLRTA DPEAQAARCV KRRRRGPPAV GGNSQTEQQL AQGPADRASG  60
ATTVKRSSRF RGVSRHRWTG RFEAHLWDKL SWNSTQKKKG KQVYLGAYDE EEPAARAYDL  120
AAVKYWGPST FTNFPISDYD NEIEIMQSMT KEEYLASLRR KSSGFSRGVS KYRGVARHHH  180
NGRWEARIGR VFGNKYLYLG TYGTQEEAAR AYDIAAIEYR GINAVTNFDL SSYIRWLKPR  240
ADDTISTEQV PEAVAEPKNT PFAASSYSTT EQAPFSLKNP FASDYVHSPR KQEVIPSSKS  300
SSPTALGLLL QSSVFRELVQ KNSSFSDDDS TDSEEPKNQL QAGSNDEFGG IIYDGVGGSP  360
FVCSSNTDEN FTWNSFTSTI FA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11334RRRLRTADPEAQAARCVKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041863.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347074.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A498HJP00.0A0A498HJP0_MALDO; Uncharacterized protein
STRINGXP_009347074.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-94AP2 family protein