PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041663.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bZIP
Protein Properties Length: 334aa    MW: 37227.8 Da    PI: 9.3045
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041663.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-104588245
                 XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                 k+ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Pbr041663.1 45 KDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 88
                 567899*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.0E-83791No hitNo description
SMARTSM003381.1E-744107IPR004827Basic-leucine zipper domain
PfamPF001702.0E-74688IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154690IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.44E-74891No hitNo description
PROSITE patternPS0003605166IPR004827Basic-leucine zipper domain
PfamPF141446.7E-33130205IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MADGSPRTDI STDVDTDDKN QRFDRDQYAI APVASDSSDK SKDPKDQKTL RRLAQNREAA  60
RKSRLRKKAY VQQLESSRLK LTQLEQELQR ARQQGIFISN SGDAAHSNSG NGAMTFNVEY  120
GRWLEEQNRQ INELRSAVNS HASDAELRII VDGILAHYDE IFKLKGTAAK ADVFHLLSGM  180
WKTPAERCFL WLGGFRSSEL LKLLVTQLEP LTEQQLVGIN NLQQSSQQAE DALSQGMDAL  240
QQSLAETLSS GSLGSSGNSG NVANYMGQMA MAMGKLGTLE GFIRQADNLR QQTLQQMHRI  300
LTTRQSARAL LAIHDYFSRL RALSSLWLAR PRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5981380.0FJ598138.1 Malus hupehensis TGA1a-related protein 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361886.10.0PREDICTED: transcription factor TGA2.2-like
RefseqXP_009361887.10.0PREDICTED: transcription factor TGA2.2-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A498JDA80.0A0A498JDA8_MALDO; Uncharacterized protein
STRINGXP_009361886.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-151TGACG motif-binding factor 6