PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041633.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 353aa    MW: 38842.8 Da    PI: 6.5124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041633.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.9e-10174220455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ + f  L  ++P +     kK++Ka++L  A+++ k+Lq
  Pbr041633.1 174 DHIMAERKRREKLSQQFIALSAIVPGL-----KKMDKASVLGDAIKHAKQLQ 220
                  699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.081170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-8174220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-15174231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-14174231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.89E-10175224No hitNo description
SMARTSM003531.8E-11176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDYSFIPQCH LNSIDEGFNA HDIGTALGEN FEESFSSESY SSYSTLTTKN TTTTMTIASS  60
GGSSINETSH GTSFERPAKL LMTSSWNSSI TENVSPKPCS STSQILAFEN LNSPLPSNPQ  120
KFCYKFEPAL KSKDEAPSKI NMQFSHAPDY EAKGCSQGTK RPCPTSRTPS HAQDHIMAER  180
KRREKLSQQF IALSAIVPGL KKMDKASVLG DAIKHAKQLQ ERVKVLEERS KKRTVESVVF  240
VKKSQLSADD DTSSCDENFD GCGPDESALP EIEARVSEKD VLIRIHCEKQ KGDVVKILSE  300
IEKLQLSVVN SSIFPFGAST LDITITSQMD DGFNMTVKDL ARKLRVALLT FM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRE
2179184RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041633.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347092.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0722e-70BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A498HL970.0A0A498HL97_MALDO; Uncharacterized protein
STRINGXP_009347092.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-72bHLH family protein