PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041632.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 351aa    MW: 38724.7 Da    PI: 7.3099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041632.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11174220455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h  +Er+RR+++ ++f  L  llP +     +K++Ka++L  A++Y+++Lq
  Pbr041632.1 174 DHVLAERKRREKLSQRFIALSALLPGL-----RKMDKASVLGDAIKYVNHLQ 220
                  58899*********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15174231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-16175236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.76E-12175221No hitNo description
PfamPF000102.8E-9175220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-14176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEDPTFINQY EMNSLDYSFD ELIFSSLSSE SYSSNPNFTS KPAAATHNFS KAFVENPHQT  60
GTQDRPAKQP KNTTSWKSCS TDPIIAAKAS SSSSSHLISF ENSDSSPPTT SQQYYGLDCK  120
VIKPKNEVEY SNGKLNLSAL VSQGSYDTQT CSPKHGQGIK RAATVTRSPL HAQDHVLAER  180
KRREKLSQRF IALSALLPGL RKMDKASVLG DAIKYVNHLQ ERTKVLEDQV AKKTGEAVVF  240
VKRMQYSADD DISSSDENFE SCSDQPLPEI EARVSDKEVL IRIHCEKTKG CLTSILSEIE  300
KLGLTIVHSC ALPFGNSTLD ITVVAQMDVE FSMTGKHLVK NLRHALLKLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-13174229863Transcription factor MYC2
5gnj_B7e-13174229863Transcription factor MYC2
5gnj_E7e-13174229863Transcription factor MYC2
5gnj_F7e-13174229863Transcription factor MYC2
5gnj_G7e-13174229863Transcription factor MYC2
5gnj_I7e-13174229863Transcription factor MYC2
5gnj_M7e-13174229863Transcription factor MYC2
5gnj_N7e-13174229863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRE
2179184RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041632.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347090.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0721e-57BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A498HNU00.0A0A498HNU0_MALDO; Uncharacterized protein (Fragment)
STRINGXP_009347090.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-60bHLH family protein