PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041508.3
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 799aa    MW: 90325.3 Da    PI: 8.762
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041508.3genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.82.7e-31643699158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  Pbr041508.3 643 DGPIYVNAKQYHGILRRRQSRAKLEAHNKL-LKARKPYLHESRHLHAVNRVRGSGGRF 699
                  57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016409.6E-1470281IPR017451F-box associated interaction domain
PfamPF082686.1E-7182282IPR013187F-box associated domain, type 3
SMARTSM005214.8E-35641702IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.166642702IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.4E-27645699IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-23645667IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860647667IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.0E-23676699IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MASSFRASST QTVFAPSYQW KITSTTPKLF RLGSYIFPTV LKPPXXXXXX XXXPYSIEAA  60
DRGLLVGVSH KNHKIPRYFV CAPTAQYWKQ IPNPKTRYFT RGTAVTVLRS SSNPVLSSWF  120
KIIRLSKPET NPSYENHSIC EVFDSNTWSW KQLNDVILPH LVFLDTKSPV SACCALYWHL  180
TNNQILAFYQ DKETWETFAL PHPMCNDVHW KYSLTAYQGR LALVRKGGDE FMEYWIMEDR  240
REKLWSERKR LSTRGTSVVA FCDSDVALVK EHGKMIFYNF KECKVSKLVE LESWHEPDYI  300
FSFPATKNPG NIADHEKILS EEFMELRVIR EHDEKIWSEN EKLLCIKTLN NDQMEMEYSF  360
RVVCNSDVAL VLETSDKKAA FCVIFKSWQR SHSLMMRRGL EASNPAQIVI ISSLAARCTG  420
YIFQPDGSVT QNNVRAVVAA RASEDGKVEK LSPLPVSGLY LFWDTTIELS IPTTQKLDKN  480
IFNQSSVAMP LYTNSMSWNP SEQVPQLLSK DVSFKAKFPP QVHHGAKHLG LQLQTDHRSS  540
SITQSIGHSQ DPSNSSDSVL LWFLPLNPGE VQTCDKDAEG NMKPVLLQSN QDFILNPSQG  600
CVPYPYVDPY FSGFLTAYGP QAMSHMVGMA PTRVLLPPDL AQDGPIYVNA KQYHGILRRR  660
QSRAKLEAHN KLLKARKPYL HESRHLHAVN RVRGSGGRFL STKQQSDQNP SSNTHHVSDS  720
INSHQKDTGG TESNHSGSSD FLPSVALHSD MTSVSNTNDN FQQPDRRFSG IPPHMTGAMQ  780
FPGGFMRAGN QHCASVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20645712474NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041508.3
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498KFE50.0A0A498KFE5_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-40nuclear factor Y, subunit A3