PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041474.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 487aa    MW: 54131.5 Da    PI: 4.9275
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041474.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-341502412102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d+e+++++sws+  +sf+v+d  ef++++Lpk+Fkh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F+ gk++ll++ik
   Pbr041474.1 150 FLNKTFQMVDDPETDSIVSWSDARQSFIVWDLYEFSRTLLPKHFKHNNFSSFIRQLNTYGFTKVDPDR---------WEFANERFQGGKRHLLKNIK 237
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
   Pbr041474.1 238 RRRR 241
                   *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-33146239IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-58146239IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.6E-37146239IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.2E-30150239IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-18150173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-18188200IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-18201213IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MVDPDVGGGS GGGDGGGRPS LPLPSKTKLT EPSKNLEEAE NELDRAKEEV TELKKEEKAV  60
TFSKGRNFDR SSSSSSSTAP PNPAAELLKV KEETVDVVVV DNDLEGGDHC KTINGGGGGG  120
GGDFGSLSSS SSMELPKPME GLREAGPPPF LNKTFQMVDD PETDSIVSWS DARQSFIVWD  180
LYEFSRTLLP KHFKHNNFSS FIRQLNTYGF TKVDPDRWEF ANERFQGGKR HLLKNIKRRR  240
RYNKKPNVVS ADYPKPGLEA EIESLKKDQD FLRLEILNLR QQQKYSQHQL TAFQQQIRSS  300
LCKQQRMLFF LTKTAVNPIS VEQLMQKRMI KRELDGGVLG KRRRLPPAQG IESFDEWIND  360
SLSFDCRNQV QEEPVPMQTA LAEQISEGIT SQRNGTPLSS PMVDKSCNAG QGLHPRFMAG  420
TSSSEDVPSA YDDMSDKFLE ENIVSNDECA LNDSSFYQEL EDLIAEPCDW SAYVSHSLVE  480
QAGCIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-231222391129Heat shock factor protein 1
5d5v_B6e-231222391129Heat shock factor protein 1
5d5v_D6e-231222391129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232238LKNIKRR
2340344KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041474.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361628.10.0PREDICTED: heat stress transcription factor A-2-like
RefseqXP_009361629.10.0PREDICTED: heat stress transcription factor A-2-like
TrEMBLA0A498KFB60.0A0A498KFB6_MALDO; Uncharacterized protein
STRINGXP_009361628.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-70heat shock transcription factor A2