PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041470.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 611aa    MW: 68853.4 Da    PI: 8.8915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041470.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09390468554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC................................TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkas.............................kapskKlsKaeiLekAveYIksL 54 
                  h + Er+RR+++N++f++L++llP+ +                             + +    +Ka++L  A eY+ sL
  Pbr041470.1 390 HMISERKRREKLNESFHTLKSLLPPGTkvsnmhayththththtnnvlfkrildrtRLNWATKDKASVLISAREYLTSL 468
                  8899*********************5559**********************99999666677799**********9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.176385468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-12387413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-5387473No hitNo description
Gene3DG3DSA:4.10.280.106.2E-12389414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7390468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-7391474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-12446488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-12448485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MDIAFQLDEG SRANFLRLVM QSFGCFYICL WSYMPPPSNL LFFLDGVYDE ENQPSSSSGS  60
LARQLFNEYR LSVFNVAEND CVPGFAFRNS LPYLELQEMD LQRLASVDTQ RQFYQEARIK  120
TAVFMGCKSG EIELGLSNVS QINIKRELMR TWLPEAFSRQ VSPHTEVASR PINVQQNPPS  180
SSSSSLRSLS ALDSPEYSSL LFNIPTTTIS HNIPEIFTQL SSXXXXXXXX XXXXXXXSDP  240
LRPININPLE PLPIINLITT TSTSTSPHQQ AIQAFSRTRN IQFPTPEIED AAMTRAILAV  300
LSSSPSSSYQ PPQHTNPPSS STTHRHLLTP KSTAFKTYST SALAPRTQMS ANLRRQNMHK  360
RSISFLRSLN LMRLREGIQT TRPTSGQLHH MISERKRREK LNESFHTLKS LLPPGTKVSN  420
MHAYTHTHTH THTNNVLFKR ILDRTRLNWA TKDKASVLIS AREYLTSLKA RVAELSKRNQ  480
QLEARLLPPA NLGANEAAAT AGSSNERVSL TLTHVSSESS PDQDQQIIDL QVVLRSLESC  540
TEDMVIRILE FLKRVENVSL MSMEANTWIS EPNSNINRVI LRLRVDQGTE WDEAAFQEAV  600
RRVVADLALM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393398ERKRRE
2394399RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041470.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018504072.10.0PREDICTED: LOW QUALITY PROTEIN: putative transcription factor bHLH041
TrEMBLA0A498KL830.0A0A498KL83_MALDO; Uncharacterized protein
STRINGXP_008344123.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.18e-37bHLH family protein