PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041460.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 599aa    MW: 66221.4 Da    PI: 6.864
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041460.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06305327426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  +lC  f  +G C++G++C+F H+
  Pbr041460.1 305 RLCFKFVSSGSCPRGESCNFQHD 327
                  566667778*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.11E-337226No hitNo description
PROSITE profilePS5010313.591301329IPR000571Zinc finger, CCCH-type
SMARTSM003560.0054303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5305330IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4305327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6305329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.896333361IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011335360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-5338362IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4338362IPR000571Zinc finger, CCCH-type
PfamPF046771.8E-39378492IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541971.42E-7380482IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.103.4E-6384500IPR011146HIT-like domain
PfamPF046763.9E-15521595IPR006767Cwf19-like protein, C-terminal domain-2
Gene3DG3DSA:3.30.428.103.4E-6569588IPR011146HIT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MAPPKILLSG DISGNLKQLI KRVVSVNKSA AGPFDVLLCV GQFFPDSADQ LDEFNDYIEG  60
RAQIPLPTYF IGDYGVGAAK VLLAATRDAG NQGFKLDGLK ICNNLYWLKG SGKFTLHGLS  120
VAYLSGQQSS DSQQFGTYNQ DDVDVLRAIA EEPGIIDFGI TNRANISDAP PGVSEPFGTD  180
NIVAELVAEI KPRYHIAGTK GVFYAREPYS NVDAVHVTRF LGLAPVGNKD KQKFIHALSP  240
TPASTMSAIE IRAQSTTTTL SPYTYKEKTA HSIEAGKRSS DSISDSQYWR YDVPQKRQKH  300
GDGNRLCFKF VSSGSCPRGE SCNFQHDVDA REQSLRGVCF DFMNKGKCER GTECKFKHSL  360
QDEGDSNSQP GRGSGNANRN RSTECWFCLS SPKVESHLII SIGEHYYCAL AKGPLVEDHV  420
LLIPIGHSPN TVSLPSECDI ELDKFQNALK KYYNKQGKEV VFFEWASKRT THANLQVVPV  480
PSAKAAALKN IFNLAAERQG FKFTTMKSGN NYDGRTLLGE QFDRNFSFFY VQLPDGTILS  540
HSIEENENFV PQFGRQVMAG LLKKADRDDW KNCTDSKEEE TKMVEDFKSG FGEFDPNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041460.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018504091.10.0PREDICTED: zinc finger CCCH domain-containing protein 64 isoform X2
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A498KF970.0A0A498KF97_MALDO; Uncharacterized protein
STRINGXP_009361605.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923