PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041432.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 730aa    MW: 79478.9 Da    PI: 6.6886
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041432.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.5e-11284340155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Pbr041432.1 284 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 340
                  57*******************4444.2455535555.779999**************98 PP
2AP246.68.4e-15363414155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pbr041432.1 363 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 414
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-14284350IPR016177DNA-binding domain
CDDcd000181.66E-19284350No hitNo description
PfamPF008471.2E-8284340IPR001471AP2/ERF domain
SMARTSM003801.4E-20285354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-12285350IPR001471AP2/ERF domain
PROSITE profilePS5103217.319285348IPR001471AP2/ERF domain
PRINTSPR003675.0E-6286297IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17363423IPR016177DNA-binding domain
CDDcd000186.76E-25363422No hitNo description
PfamPF008471.0E-9363414IPR001471AP2/ERF domain
SMARTSM003802.4E-33364428IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-18364422IPR001471AP2/ERF domain
PROSITE profilePS5103219.045364422IPR001471AP2/ERF domain
PRINTSPR003675.0E-6404424IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MGSMNWLGFS LSPQEVVPAD PTISEGADHH HQQHGQDHHD LSDQTTTLVS RLRSKYSDEI  60
SGTDASGDFF DLTNSHVDTS ATPTAPNHHS LNHLPTSFGM LHQAAFNSQG ADWNMNSPDS  120
TNYKFTSDHL SMLMGSTSSL QLPLEISDPT NVINGDGAVG NININSSSSN IGLSMIKTWL  180
RNQPAPQLQE MNKSDIHGIG VSNTSTSISS AQTLSLSMST TGATTAGDQT CSSDRDRDNN  240
KQAIIRTAAP AVTTQSGIDN QTGIATAIEA VPRKSIDTFG QRTSIYRGVT RHRWTGRYEA  300
HLWDNSCRRE GQTRKGRQGG YDKEEKAARA YDLAALKYWG TTTTTNFPVS YKTKSSGFSR  360
GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN  420
FDMTRYDVKS ILESSTLPIG GAAKRLKDVE QAHHQHLHEM TLLADGHNRS TTDDQREKLM  480
MMNTSTSNSL DQYHQQLING DHHGMRINNV YGTGVGWPTL AFNQAATAVA HQAAVPPFGM  540
HYYSSVPYNS NGGQRVWCKQ EQDTNSQSFY QPQDHHHQLL QLGSTHNFFQ PVNLMGNSST  600
DSMEHSSGSN SVVYNGTTAG DHGGYIIPMG TAIANDHENN SNAFGNGSSD HDQVKPALGY  660
ENVFGSSSTT TTADAYNHAK SLYYLPVQAP QSSSVSSIGV SMKGSSEYDN WVPTAVPTST  720
HNMAPFSLE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041432.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4296731e-78KC429673.1 Rosa canina BBM1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355861.10.0AP2-like ethylene-responsive transcription factor BBM1 isoform X2
SwissprotQ8LSN21e-116BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A498K9U50.0A0A498K9U5_MALDO; Uncharacterized protein
STRINGXP_009361715.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-105AP2 family protein