PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041371.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 331aa    MW: 36871.3 Da    PI: 9.7243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041371.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-072871344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     rWT  E + + +a + +  +   +W+ +a++++ g+t  ++k  +
      Pbr041371.1 28 RWTSAENKMFENALAVYDRDtpdRWHQVAAMIP-GKTVRDVKKQY 71
                     9*****************99*************.********987 PP
2Myb_DNA-binding482.8e-15137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
      Pbr041371.1 137 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 181
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-41873IPR009057Homeodomain-like
PROSITE profilePS512937.5152479IPR017884SANT domain
SMARTSM007175.3E-82577IPR001005SANT/Myb domain
CDDcd001671.77E-62874No hitNo description
SuperFamilySSF466893.45E-102878IPR009057Homeodomain-like
PROSITE profilePS5129422.032130186IPR017930Myb domain
SuperFamilySSF466898.22E-17132185IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-18133185IPR006447Myb domain, plants
SMARTSM007172.7E-13134184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-12134181IPR009057Homeodomain-like
PfamPF002496.1E-13137181IPR001005SANT/Myb domain
CDDcd001671.71E-11137182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKFEMEILSP SSYSSTSNWL VEESKSARWT SAENKMFENA LAVYDRDTPD RWHQVAAMIP  60
GKTVRDVKKQ YEELEADVGQ IEAGLVPIPG YSTSPFTLEW VNRHGGYEGF KQQACGIGGK  120
RSSLNRPSDH ERKKGVPWTE EEHKLFLMGL KKYGKGDWRN ISRNFVVTRT PTQVASHAQK  180
YFIRQISGGK DKRRASIHDI TTVNLNDMRT PSPDNKSPLS PELPPHPNSA ATARVPFQWQ  240
ALSPELPPHP NSAATARVPF QGHQPQGGGV NMGFNQGHGN MFMSSHPYGI SSYGLKMQGQ  300
DLLKGAANNS YYGPQNLSFQ MQSSQHYPHG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1729941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041371.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346883.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-132DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A498IRG90.0A0A498IRG9_MALDO; Uncharacterized protein
STRINGXP_009346883.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-103MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]