PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041200.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 264aa    MW: 30169.8 Da    PI: 4.5671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041200.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-3054112259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+++Hnh+
  Pbr041200.1  54 SDLWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSKTDASVLIITYTSSHNHP 112
                  699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-3146113IPR003657WRKY domain
SuperFamilySSF1182901.15E-2550114IPR003657WRKY domain
SMARTSM007748.0E-3653113IPR003657WRKY domain
PROSITE profilePS5081131.18154114IPR003657WRKY domain
PfamPF031061.6E-2555112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDETLSPEPD SDVSKNLRPE NQPSKRRKVA HEKTVVTVKI GANVGKLKNE GPPSDLWSWR  60
KYGQKPIKGS PYPRGYYRCS TSKGCSAKKQ VERSKTDASV LIITYTSSHN HPGPPDVNVI  120
STTQQEQEDD QKQEQEQEQE DDQEQEQEQD QKQDQDKKQD QEQEHGKLEE HFHYIESPIR  180
SSQDEHIFTA HDTSFGFLLD EEQEPLSLSY SQLMSFSTPK LSEENNDFFD ELEELPTFSS  240
FPSFMGRTNN LSFGIERIPS VPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-22541141779Disease resistance protein RRS1
5w3x_D1e-22541141779Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041200.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346616.10.0PREDICTED: probable WRKY transcription factor 35
TrEMBLA0A498IMN21e-157A0A498IMN2_MALDO; Uncharacterized protein
STRINGXP_009346616.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.16e-38WRKY DNA-binding protein 35