PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041171.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 342aa    MW: 38331.9 Da    PI: 6.4299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041171.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-0858105354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+i e +++ +k+L
  Pbr041171.1  58 IQKADREKLRRDRLNEQFLELGNVLDPD----RPKNDKATIIEDTIQALKDL 105
                  56789*******************9997....79*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.69755105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-1255124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-1056127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-656109No hitNo description
PfamPF000104.1E-658105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-561111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDQLKHEDLN QSAPPPFSFA AEFPQPASDR RVPPTRSQPN SSQRPEGEVK DCLTARKIQK  60
ADREKLRRDR LNEQFLELGN VLDPDRPKND KATIIEDTIQ ALKDLTLEVD KLKSECVSLT  120
EESRELTHEK NDLREEKASL KSDIENLNAQ YQQRLRTMFP WGAMDHSVVM APPSYPYPMP  180
MTMPMPMPMQ MPARPMPMHP HMQPYHYFGN QNPGVIPNPC STYLPYITTN TLVEQQSTQY  240
VSPVVHPGSQ SQVSGKQEAI NKSPGESQVH KSDDSIDVTT ELELKTPGST SDQDLSSVRR  300
KSKMSARLEH REGSSSSRCS SSRSVQDSSS NSVVGGRKAD D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346632.10.0PREDICTED: transcription factor bHLH121
RefseqXP_009346633.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT237e-90BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A498JQ950.0A0A498JQ95_MALDO; Uncharacterized protein
STRINGXP_009346632.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.22e-83bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]