PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041115.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 307aa    MW: 34411 Da    PI: 5.1637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041115.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08186230655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++ r RR++i ++ +eL +l+P        K++ ae+L+ A +Y+k+Lq
  Pbr041115.1 186 SIAARERRRKITEKTQELGKLVPGG-----SKMNTAEMLTAAYNYVKYLQ 230
                  67889******************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.92E-9179233No hitNo description
PROSITE profilePS5088812.697180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-12181238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-11184236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-10186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6186230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MALSPLPPQV FDSEMTITNC FQQNLEAELL TADFLQYYYY SEYNINSNFS NSFVDEYHSW  60
YDPYDLLNLE NHDHDTTTDD HLLLPHNSFS LTAPDFNPYP NPKRQKCFQD CLFPDFTLSN  120
GFVPNLCPLP SLVPVPKFFA TPLPKFDQLL EGLTNSTGAN IDPGHESITN AANKKKVGEK  180
CVSAQSIAAR ERRRKITEKT QELGKLVPGG SKMNTAEMLT AAYNYVKYLQ AQVGILQLMG  240
SLKELKEAPP IEELQVVASP GLQEKLYLEN NCLVPKKFVA ILAKHFDAQS KPSFSNNLNQ  300
LLTSTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173194KKKVGEKCVSAQSIAARERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041115.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361875.10.0PREDICTED: uncharacterized protein LOC103952075
TrEMBLA0A498JUG20.0A0A498JUG2_MALDO; Uncharacterized protein
STRINGXP_009361875.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-26bHLH family protein