PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr041094.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 322aa MW: 35739 Da PI: 4.3702 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.6e-16 | 27 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e ++++++ lG++ W++Ia++++ gRt++++k+ w+++l Pbr041094.1 27 RGNFTIEEEESIIRLHEALGNK-WSKIAAHFP-GRTDNEIKNVWNTHL 72 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.101 | 1 | 21 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.35E-21 | 8 | 80 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-10 | 8 | 32 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.844 | 22 | 76 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-13 | 26 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-15 | 27 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.64E-10 | 29 | 72 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-22 | 33 | 76 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MTGRGLLRCG KSCRLRWINY LRPDVKRGNF TIEEEESIIR LHEALGNKWS KIAAHFPGRT 60 DNEIKNVWNT HLKKRLGCQN LPSSSSSSSS TTSTTLLSGG KPSVGGGEEL IEHQSAEETS 120 MATNNKPHEP CSLTIQENPN HHDSPMELTN DPKELTGLTT SSSNVSSNES NGSSSSSQVV 180 GMSRPGAEEQ QMDDSNDFSE IFDFPFESDS DFWDMFNDFE PLQSNLVQVL HEADEANCQR 240 SGLGQVENGK WLSYLESELG LEVTPTESEK NNQEILPKYA SEQQVFPEAF DKMPNPTEAD 300 ESMDYFNSNV AFATQQFLHS N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-18 | 8 | 76 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-18 | 8 | 76 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 106 | GGKPSVGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr041094.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009361864.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A498JUC5 | 0.0 | A0A498JUC5_MALDO; Uncharacterized protein | ||||
STRING | XP_009361864.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10029 | 30 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 7e-41 | myb domain protein 58 |